PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF182900010CFD_t1
Common NameTRAES_3BF182900010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 497aa    MW: 52885.9 Da    PI: 8.6758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF182900010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-067799123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C++Cgk F r  nL+ H r H
  TRAES3BF182900010CFD_t1 77 YVCEICGKGFQRDQNLQLHRRGH 99
                             9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-87699No hitNo description
SMARTSM003550.00697799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8017799IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-67799IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035540119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4142174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-8149174No hitNo description
SMARTSM00355210154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMLKDFAAIQ QQQQQQLALA ADENMSNLTS ASGDQTSVSS HPLPPPSKKK RSLPGNPDPD  60
AEVIALSPRA LMATNRYVCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRNP NEVVRKKVYV  120
CPEPGCVHHD RSRALGDLTG IKKHFSRKHG EKKWKCDKCA KRYAVQSDWK AHSKVCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAEESA RAVAVAVEEH QHPGMLYSHG GGGAGFQMPA  240
VMDPSSSLGG GHGLIQELCL KREREQQQQQ QQFAQPWLSE QQQQQLEMAG EGAQAMFGTA  300
RMEQEFNASS TPESSTQPVG MSFASFPSSS AAPSAAGATA SSHMSATALL QKAAQMGATL  360
SRPSGQGQMA ASTFSSSSSA AITNVTNNAP AAATSSSAAT STVGVGFGHA FEAPAHFGVD  420
QRPSANRNAG NAGVGGAGRG NAGGANDGLT RDFLGLRAFS HGDILSMGGF DPCMPTSASA  480
RAAYDQQGPQ SSNPWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33150216369Zinc finger protein JACKDAW
5b3h_F7e-33150216369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116KLKQRNPNEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164353.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-122IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A077RQF90.0A0A077RQF9_WHEAT; Uncharacterized protein
TrEMBLA0A446PGI50.0A0A446PGI5_TRITD; Uncharacterized protein
STRINGTraes_3B_CC1C6055C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-98indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]