PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF156500010CFD_t1
Common NameTRAES_3BF156500010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family DBB
Protein Properties Length: 349aa    MW: 37451.8 Da    PI: 5.0816
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF156500010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.41.9e-05444539
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              C+ +e  e++  C  ++  lC+ C    H        H +
  TRAES3BF156500010CFD_t1  4 LCSACEAAEARVLCCADEAALCARCDRDVHDAnrlagkHHR 44
                             7******99******************99944667777554 PP
2zf-B_box28.72.7e-095999337
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                             +++C+ ++e ++ +fC +++ llC++C ++ H        H
  TRAES3BF156500010CFD_t1 59 APNCDICQEGHAYFFCVEDRALLCRSCDVAVHTAnafvsaH 99
                             689******88*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
SMARTSM003361.3E-7147IPR000315B-box-type zinc finger
CDDcd000219.80E-7347No hitNo description
SMARTSM003362.8E-1357104IPR000315B-box-type zinc finger
PROSITE profilePS501199.41457104IPR000315B-box-type zinc finger
PfamPF006432.0E-75991IPR000315B-box-type zinc finger
CDDcd000213.95E-962104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHDANRLAG KHHRLPLLSA ASNPPAVSAP  60
NCDICQEGHA YFFCVEDRAL LCRSCDVAVH TANAFVSAHR RFLLTGVQVS LEPDEQEEPV  120
PEPEPEPQPP NNASSAPLPP PMCHRKRSPT PLYSDGDIDW AAGPDVGITG NLPDWSVIDE  180
QFGSGTPALR PAEPEVIKAP PRKSPRVAVT AASAALFGGS MPDWPLDEFF GFTEFNSGFG  240
FAENGTSKAD SGKLSSPNRR SMSSSSSGNA TQNAQDFFGQ VPEVHWSRST MPELPSPPTA  300
SGLHWQGDPH YGPASDSGAV FVPDICSPEN PFRCFTAGAD QQLKRRRRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559200.0AK355920.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192017.10.0B-box zinc finger protein 22-like
TrEMBLA0A077RYE70.0A0A077RYE7_WHEAT; Uncharacterized protein
STRINGMLOC_19814.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-40light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]