PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF156500010CFD_t1 | ||||||||
Common Name | TRAES_3BF156500010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | DBB | ||||||||
Protein Properties | Length: 349aa MW: 37451.8 Da PI: 5.0816 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.4 | 1.9e-05 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++ C ++ lC+ C H H + TRAES3BF156500010CFD_t1 4 LCSACEAAEARVLCCADEAALCARCDRDVHDAnrlagkHHR 44 7******99******************99944667777554 PP | |||||||
2 | zf-B_box | 28.7 | 2.7e-09 | 59 | 99 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++e ++ +fC +++ llC++C ++ H H TRAES3BF156500010CFD_t1 59 APNCDICQEGHAYFFCVEDRALLCRSCDVAVHTAnafvsaH 99 689******88*******************99545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.637 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.80E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.8E-13 | 57 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.414 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-7 | 59 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.95E-9 | 62 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHDANRLAG KHHRLPLLSA ASNPPAVSAP 60 NCDICQEGHA YFFCVEDRAL LCRSCDVAVH TANAFVSAHR RFLLTGVQVS LEPDEQEEPV 120 PEPEPEPQPP NNASSAPLPP PMCHRKRSPT PLYSDGDIDW AAGPDVGITG NLPDWSVIDE 180 QFGSGTPALR PAEPEVIKAP PRKSPRVAVT AASAALFGGS MPDWPLDEFF GFTEFNSGFG 240 FAENGTSKAD SGKLSSPNRR SMSSSSSGNA TQNAQDFFGQ VPEVHWSRST MPELPSPPTA 300 SGLHWQGDPH YGPASDSGAV FVPDICSPEN PFRCFTAGAD QQLKRRRRC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355920 | 0.0 | AK355920.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192017.1 | 0.0 | B-box zinc finger protein 22-like | ||||
TrEMBL | A0A077RYE7 | 0.0 | A0A077RYE7_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_19814.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 7e-40 | light-regulated zinc finger protein 1 |
Publications ? help Back to Top | |||
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