PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF155500010CFD_t1 | ||||||||
Common Name | TRAES_3BF155500010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 301aa MW: 31737.5 Da PI: 8.7905 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.1 | 1.5e-36 | 52 | 108 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprCdstntkfCy+nnysl+qPr+fC++C ryWt+GGalrnvPvGgg+r+n k+ TRAES3BF155500010CFD_t1 52 GLNCPRCDSTNTKFCYFNNYSLTQPRHFCRSCSRYWTRGGALRNVPVGGGCRRNTKR 108 679**************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 36 | 107 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.1E-31 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MATAGAGSGA AGGGDDGCGG AVDGDCGGIG NKKSRSMSER ARLARLPQPV PGLNCPRCDS 60 TNTKFCYFNN YSLTQPRHFC RSCSRYWTRG GALRNVPVGG GCRRNTKRRA KPKVVSATSR 120 AAMVGTSSVT STMSSSTTYV TGTGTTPPRL QYPMFGSVPS HDSQFADSFD PANLGLIFPV 180 RLLLADSDAS AVDGCAQQHH HHAHGNGMEQ LSVAQDSFPF MYAMDHQMSG LSAQAMPITM 240 GTMQGMFHVG LQGIGGGNGD EIGGQQLHHP PAKRNHKQQD YPSSRDMYGD VVNANGGVGY 300 I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181317.1 | 1e-146 | dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A080YUV8 | 0.0 | A0A080YUV8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6G009 | 0.0 | A0A3B6G009_WHEAT; Uncharacterized protein | ||||
STRING | EMT09741 | 1e-145 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 9e-40 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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