PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF110700030CFD_t1
Common NameTRAES_3BF110700030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 241aa    MW: 26256.5 Da    PI: 11.6458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF110700030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-13165209347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+ E+ l++ + k++G g+W+ I+r + ++Rt+ q+ s+ qky
  TRAES3BF110700030CFD_t1 165 PWTEHEHSLFLLGLKEYGRGDWRNISRNFVQTRTPTQVASHAQKY 209
                              8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813839.03E-1353137IPR001810F-box domain
PfamPF006461.3E-663101IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.7E-964111No hitNo description
PROSITE profilePS5129414.201158214IPR017930Myb domain
SuperFamilySSF466898.97E-16159213IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-15162212IPR006447Myb domain, plants
SMARTSM007174.8E-11162212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10164208IPR009057Homeodomain-like
PfamPF002493.6E-10165209IPR001005SANT/Myb domain
CDDcd001672.60E-10165210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKRPSGSSAG RDPRAPPPAS GGGGSSEPAK KRQRTSSSSQ AEASSSSSQP PPAPPGDARA  60
VPDLGEDVMF EVLRRAEART LAAAACVSRG WRVLAQDERL WEAPCVREWT GLGFSEQLLR  120
AVVLPLGGFR RLHAVSVQAR RRFGVGCGNW HGVRTPGQGR RRGVPWTEHE HSLFLLGLKE  180
YGRGDWRNIS RNFVQTRTPT QVASHAQKYF IRLGSGVARR SSIHDITTVH LTDDQPPSPS  240
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU8570370.0KU857037.1 Triticum aestivum GID2 protein isoform 2 (gid2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200806.11e-146F-box protein GID2-like
TrEMBLA0A077RVB51e-172A0A077RVB5_WHEAT; GID2 protein isoform 2
STRINGEMT286301e-141(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1245133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-35Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]