PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF110700030CFD_t1 | ||||||||
Common Name | TRAES_3BF110700030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26256.5 Da PI: 11.6458 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 165 | 209 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ l++ + k++G g+W+ I+r + ++Rt+ q+ s+ qky TRAES3BF110700030CFD_t1 165 PWTEHEHSLFLLGLKEYGRGDWRNISRNFVQTRTPTQVASHAQKY 209 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 9.03E-13 | 53 | 137 | IPR001810 | F-box domain |
Pfam | PF00646 | 1.3E-6 | 63 | 101 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 1.7E-9 | 64 | 111 | No hit | No description |
PROSITE profile | PS51294 | 14.201 | 158 | 214 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-16 | 159 | 213 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-15 | 162 | 212 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.8E-11 | 162 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-10 | 164 | 208 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-10 | 165 | 209 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.60E-10 | 165 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MKRPSGSSAG RDPRAPPPAS GGGGSSEPAK KRQRTSSSSQ AEASSSSSQP PPAPPGDARA 60 VPDLGEDVMF EVLRRAEART LAAAACVSRG WRVLAQDERL WEAPCVREWT GLGFSEQLLR 120 AVVLPLGGFR RLHAVSVQAR RRFGVGCGNW HGVRTPGQGR RRGVPWTEHE HSLFLLGLKE 180 YGRGDWRNIS RNFVQTRTPT QVASHAQKYF IRLGSGVARR SSIHDITTVH LTDDQPPSPS 240 Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU857037 | 0.0 | KU857037.1 Triticum aestivum GID2 protein isoform 2 (gid2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200806.1 | 1e-146 | F-box protein GID2-like | ||||
TrEMBL | A0A077RVB5 | 1e-172 | A0A077RVB5_WHEAT; GID2 protein isoform 2 | ||||
STRING | EMT28630 | 1e-141 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12451 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-35 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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