PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF108500010CFD_t1 | ||||||||
Common Name | TRAES_3BF108500010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | RAV | ||||||||
Protein Properties | Length: 351aa MW: 38194.2 Da PI: 10.1446 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2.1e-11 | 56 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW ++I++ r +r++lg+f + Aa+a++ a+++++g TRAES3BF108500010CFD_t1 56 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 104 689***9788.8********9......44*************************98 PP | |||||||
2 | B3 | 93 | 2.1e-29 | 170 | 268 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +g TRAES3BF108500010CFD_t1 170 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtperTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAG 255 89*************************99887766444458999****************************************** PP -EEEEEE-SS.SE CS B3 78 DfvvFkldgr.se 89 D+++F+ + +e TRAES3BF108500010CFD_t1 256 DSIIFSCSAYgQE 268 *****96654334 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.10E-22 | 56 | 112 | No hit | No description |
Pfam | PF00847 | 1.7E-6 | 56 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-15 | 56 | 113 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-19 | 57 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.521 | 57 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-22 | 57 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 94 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-38 | 165 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.19E-29 | 167 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.98E-28 | 168 | 260 | No hit | No description |
SMART | SM01019 | 2.8E-21 | 170 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-27 | 170 | 273 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.394 | 170 | 279 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGVEILSSMV EDSSQYSSGA STATTESGTT GRAPTALSLP VAIADESVTS AQSAPSRFKG 60 VVPQPNGRWG SQIYERHARV WLGTFPDQDL AARAYDVAAL RYRGRDAATN FPCAAAEAEL 120 AFLGAHSKAE IVDMLRKHTY ADELRQGLRR GRGMGARAQP TPSWAREPLF EKAVTPSDVG 180 KLNRLVVPKQ HAEKHFPLKR TPERTTTTGN GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT 240 KGWSRFVREK GLAAGDSIIF SCSAYGQEKQ LFIDCKKNTT VNSGKSASPL PVVETAKGEQ 300 VRVVRLFGVD IAGVKRGRAA TAEQGPPELL KRQCVPLPHG QRSPALGAFV L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-47 | 167 | 276 | 11 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191173.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1 | ||||
Refseq | XP_020200371.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1 | ||||
Refseq | XP_020201146.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1 | ||||
Swissprot | Q9AWS0 | 1e-139 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A077RF86 | 0.0 | A0A077RF86_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_DF7E92499.2 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_3B_DF7E924991.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-96 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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