PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF097400030CFD_t1
Common NameTRAES_3BF097400030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 320aa    MW: 35106.4 Da    PI: 8.9103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF097400030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1064.8e-33722121128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+Ptd+el+ e+L+ k++ ++      ++++  +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r++
  TRAES3BF097400030CFD_t1  72 LPAGVKFDPTDQELL-EHLEGKARLDTrklhplIHEFIpAIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKV 155
                              799************.99**99988885665552222234776657**********.555555677******************74 PP

                      NAM  79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +      + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  TRAES3BF097400030CFD_t1 156 HtdeqggETRWHKTGKTRPVFT-EGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 212
                              4456555778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3764231IPR003441NAC domain
PROSITE profilePS5100533.08272231IPR003441NAC domain
PfamPF023654.6E-1573212IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLASA AAVAAAAAKK QQHHQQQASS HVSLVRTCPA CGHHAQYEQL  60
QAAATIQDLP GLPAGVKFDP TDQELLEHLE GKARLDTRKL HPLIHEFIPA IEGENGICYT  120
HPERLPGVGK DGLIRHFFHR PSKAYTTGTR KRRKVHTDEQ GGETRWHKTG KTRPVFTEGK  180
LKGYKKILVL YTNYGKQRKP EKTNWVMHQY HLGSDEEEKD GELVVSKVFY QTQPRQCGGS  240
TAAAVRDAAI TAGATSDHHR HHHEDGHNNN MLKEAAGMVD FYSPTAAALI GNRAAAAAAA  300
ASAHLMPNFE VHTGGTGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596310.0AK359631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100E16.
GenBankAK3700350.0AK370035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160558.10.0NAC domain-containing protein 73
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A077RAB50.0A0A077RAB5_WHEAT; Uncharacterized protein
STRINGTraes_3B_8BB0A0443.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-116NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]