PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF096900170CFD_t1
Common NameTRAES_3BF096900170CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 387aa    MW: 41355.3 Da    PI: 7.6022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF096900170CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08122142526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C++f++ G Ck+Gd C +aHg
  TRAES3BF096900170CFD_t1 122 ACPDFRK-GGCKRGDACEYAHG 142
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5121144IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6122142IPR000571Zinc finger, CCCH-type
SMARTSM0035612152175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258152176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMMMSEGVSV PPWGNHLPVS GVDAGGGGGG DETPFLFAAL RQYLPCNDVL GGAGAGAEDE  60
DEAAAVAAAV DAYACDEFRM YDFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRKYHYSG  120
TACPDFRKGG CKRGDACEYA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRA  180
MPSQHSSPRS TPLSPLAESY DGSPLRRQAF ESYLSKSIMS SSPTSTLLSS PPKSPPSESP  240
PLSPDGAASF RRGSCGSWPG VGSPVNDVLA SLRQLRLAKA QASPSGGWSG YPTSPAAYGS  300
PKAAGLYSLP TTPMGAQTGA SSFMPNLEPL NLRFLDDEEP VQRVESGRAL REKVFERLSR  360
DGAAPRSCEV GAGAGGPDVG WVSDLIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192020.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A077RQC70.0A0A077RQC7_WHEAT; Uncharacterized protein
TrEMBLA0A446PGC30.0A0A446PGC3_TRITD; Uncharacterized protein
STRINGMLOC_63525.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-82C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]