PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF096700010CFD_t1
Common NameTRAES_3BF096700010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 200aa    MW: 23153.9 Da    PI: 6.4213
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF096700010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-09841102753
                              HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                 Homeobox  27 aeereeLAkklgLterqVkvWFqNrRa 53 
                              ++ r++L+++lg++ +qVk+WFqN+R+
  TRAES3BF096700010CFD_t1  84 EKLRKDLSERLGMNAQQVKFWFQNKRT 110
                              6779**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000464.3E-784110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-784110IPR009057Homeodomain-like
SuperFamilySSF466893.04E-684121IPR009057Homeodomain-like
CDDcd000864.32E-487109No hitNo description
PROSITE profilePS5007110.02587115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLVDGRIGGE LGFSGAITMD EHYNSGVHNE LDLFMSSKHN HLFQDNHNDE MDGLLEATTV  60
VGNTNDAKVV DADHDNNDGE THNEKLRKDL SERLGMNAQQ VKFWFQNKRT FSKGKMQRWE  120
IQNRWVENER LKTERQAITL AMQNKTCLKC RGVMVQSQDT SERECLYTEN MRLKEELLHA  180
TAYLKEGLHR NGMSLPWARN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-146HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201140.11e-110homeobox-leucine zipper protein MERISTEM L1-like
TrEMBLA0A077RQR01e-147A0A077RQR0_WHEAT; Uncharacterized protein
STRINGTRIUR3_29318-P11e-110(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.13e-17homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]