PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF095600020CFD_t1 | ||||||||
Common Name | TRAES_3BF095600020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 968aa MW: 107417 Da PI: 8.8443 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 850 | 872 | 1 | 21 |
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 y+C+ C++sF +k +L H r TRAES3BF095600020CFD_t1 850 YTCTieGCSMSFDTKKELSLHER 872 99*******************98 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00035 | 874 | 897 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L +H ++H TRAES3BF095600020CFD_t1 874 TCPvkGCGKKFFTHKYLLQHRKVH 897 79999*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 22 | 776 | 798 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 23 | 799 | 823 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.746 | 799 | 828 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 801 | 823 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 11 | 850 | 872 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.819 | 873 | 902 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.56 | 873 | 897 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-6 | 874 | 901 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 875 | 897 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.33E-9 | 890 | 931 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-7 | 902 | 927 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.031 | 903 | 927 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 903 | 932 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 905 | 927 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.54E-7 | 921 | 955 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-7 | 928 | 955 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.9 | 933 | 959 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 933 | 964 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 935 | 959 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 968 aa Download sequence Send to blast |
MNAGEFVVTF PGSYHCGFSH GEFVVTFPGS YHCGFSHVSL TQSRKDPSIG AMEPRSSRLK 60 EKKKGEGGQL VKKLFVQNAI QDNELLSCLL NDGSSCIILP INAHDGPVLS ALRSRSQLIP 120 KSKLSDGLCS NGETLEALAR CTHNSHNAEG DKADVISAAG LLDQGLLSCV SCGILSFSCV 180 AVIKPRECAS KYFMSYDYNS INDQLVDSGG CHLANAAGSE GTNGGILRPG FELHGTEILP 240 DAGPVTDSAP DLLASAYGNQ PDTDEHNRNK KIKVSHDSSE LDGTKIPSSS IKCQQRPSSQ 300 SSQCIGGSSI SNGPRGVRTR NKYQLKMALS QGFQLKNNYW TMEQKVQPEP SRSKETVKEP 360 LDASGADNDA RCSTAISVGG PRISTTTMDN LNKPIVKIDK DSARMHVFCL EHAVEVEKQL 420 QAIGGAHVIL LCRPVLFKIT VILSINVEYL RIEAEARSLA AELEVEHGWK DIHFREANME 480 DRKMIEELLQ DEESIPTSSD WAVKLGTNLY YSANLAKSPL HNKQIPYNRV IYRAFGRSSP 540 DNSPVKLENC EGSRDTQKKI VLAGRWCGKA WMSNQVHPFL AQRIESSELE ETDKSSGVEA 600 SKRNSSTITD VPKSSSKKRE NMAVEVTTDT KRPRLAKGYS SKALKGVAEV SHPSPTAVVP 660 RVSSRIADRA NRLKSEMTEE PKATSHSRTR PPKKFEVEAK KQMKMRKEDK MMAPTAPKDD 720 EERPSATKGG PSVGPATKLE FSQRKRRTRT DTMKQLKKAT GEERTPRDHP MHVEGYTCSI 780 EGCSMSFDTR NKLSLHELDM CPVEGCGKKF FTHKFLLQHG KVHIETTKQL KKATGEERAP 840 RDHRMRVEGY TCTIEGCSMS FDTKKELSLH ERDTCPVKGC GKKFFTHKYL LQHRKVHTDD 900 RPLKCPWEGC DVAFKWAWAR TEHLSVHTGD RPYVCREPGC AETFRFISDF SRHKRETGHS 960 TKQTKTKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 2e-58 | 849 | 964 | 22 | 137 | Lysine-specific demethylase REF6 |
6a58_A | 2e-58 | 849 | 964 | 22 | 137 | Lysine-specific demethylase REF6 |
6a59_A | 2e-58 | 849 | 964 | 22 | 137 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 742 | 747 | QRKRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164795.1 | 0.0 | lysine-specific demethylase JMJ705-like | ||||
Swissprot | Q5N712 | 0.0 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | A0A077S305 | 0.0 | A0A077S305_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_4F4479FAF.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5346 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 1e-55 | relative of early flowering 6 |
Publications ? help Back to Top | |||
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