PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF090300050CFD_t1 | ||||||||
Common Name | TRAES_3BF090300050CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 204aa MW: 22194.8 Da PI: 9.9036 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.1 | 7.9e-38 | 97 | 152 | 4 | 59 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC s++tkfCy+nny+++qPr+fCkaC+ryWt+GGalrnvP+G+grrkn+ TRAES3BF090300050CFD_t1 97 APLPCPRCRSRETKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPIGAGRRKNR 152 5689**************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.3E-31 | 99 | 152 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.556 | 99 | 153 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 101 | 137 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-20 | 108 | 152 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLSHVEMAPA GAGGGFKLFG KVITQCVEGT QASPSPSPVF AAQDEERRLH GETDRTTTAV 60 KREAADMDSS QQQQQQGAEA SRRTQLQESA EARAAAAPLP CPRCRSRETK FCYFNNYNVN 120 QPRHFCKACH RYWTAGGALR NVPIGAGRRK NRPLGPIATV AGHHHHHHRA AAGFVLGFPS 180 PSSSPTSPPP VYADRWQLGP DGRF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188982.1 | 1e-121 | dof zinc finger protein DOF1.5-like | ||||
Swissprot | Q5JLR7 | 1e-60 | DOF5_ORYSJ; Dof zinc finger protein 5 | ||||
TrEMBL | A0A077RU98 | 1e-149 | A0A077RU98_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PZU4 | 1e-149 | A0A446PZU4_TRITD; Uncharacterized protein | ||||
STRING | BRADI2G50370.1 | 3e-69 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 2e-29 | Dof family protein |
Publications ? help Back to Top | |||
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