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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF081300020CFD_t1 | ||||||||
Common Name | TRAES_3BF081300020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 25721.7 Da PI: 9.8753 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.6 | 7.5e-32 | 20 | 119 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l++ TRAES3BF081300020CFD_t1 20 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRR 105 7**********************************************9977766******************************** PP DUF260 86 qleqlkaelallke 99 + + l+ae a+l++ TRAES3BF081300020CFD_t1 106 ENAVLRAENAALRR 119 *******9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.364 | 19 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-29 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTGGVNGNGG GGGGGGGGGA CAVCKHQRRK CEPNCELAAY FPANRMNDFR ALHLVFGVAN 60 LTKLIKANAT EAARRRAAET LTWEARWRER DPSEGCYREV SCLRRENAVL RAENAALRRR 120 ADQCACCATT LHHQQQQQQI LLVSAYNNGA RPPGGVLHGA STGVVPGGFY SGNAGAVRAA 180 NGNGPMPARP HVSAPAPQTT MAGYAQGDRH HAASGGANGA GAPRPGAAGQ AEPREKSSAR 240 CDAQRTAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-17 | 16 | 126 | 7 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-17 | 16 | 126 | 7 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192106.1 | 1e-112 | uncharacterized protein LOC109777955 | ||||
TrEMBL | A0A077RR22 | 1e-178 | A0A077RR22_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PM55 | 1e-178 | A0A446PM55_TRITD; Uncharacterized protein | ||||
STRING | BRADI2G08480.1 | 6e-95 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-15 | LOB domain-containing protein 2 |
Publications ? help Back to Top | |||
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