PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF079700090CFD_t1 | ||||||||
Common Name | TRAES_3BF079700090CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 643aa MW: 71280.4 Da PI: 5.1254 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.2e-09 | 525 | 572 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E ++lvd+v+q+G+g W+ I r Rt ++k++w+++ TRAES3BF079700090CFD_t1 525 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNL 572 7**************************99999*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.855 | 518 | 577 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 519 | 576 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-14 | 520 | 579 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-9 | 522 | 575 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.21E-17 | 524 | 574 | No hit | No description |
Pfam | PF00249 | 6.8E-6 | 525 | 572 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MEVDTLQDAQ ETKNGGNDFK ENGSLDPVVY QLVRVEGDGT LVPPTEDEVL QIEQFLDDKV 60 DLPSIDDVGN VEDFFTNDCM LLKEPDFEEG YSELETNGEI HTQQFDADLE VDRLKPSVDS 120 LDIPSKCTVD HDHKPDKLNT EQGDNNIVHQ DNASTETPKS TVLNDSCSAE KEKTDACSRS 180 VNNSSTGPSI SGVTSSVPDF SILRGEVCLD NLTIRELQEA FRATFGRETT VKDKLWLKRR 240 ITMGLTNSCD VQSSGCVVKD YKIVCKDAKH ELPTIEGIPK AEVEATSLVR YQVLGPGNER 300 DTPSCSYYRS EDQQRSSNRL KGVSTDNDES EGTLQDEQGA AKRLRKPTKR YIEELSDTET 360 LDSTGKLSSP GKRAAHGEVL LRQRVTPLQE VDSLSITYPT RKDTFGGFSV HVPYASRMRR 420 GRPRRNFISF LDDDPPVECP EVQMAVETMS GKDGEHVNHV NSAVEVPLMK NTEKKGGHIE 480 TAEKKGGHIE TADNKEIHSI EADDICRSDA KTKTKRGLKR KHHRAWTLSE VLKLVDGVAQ 540 FGPGKWSEIR RLSFASYSYR TSVDLKDKWR NLIRASQTQL SPENDGVCPR KSNPSIIPVP 600 PAILLRVKEL AELQPQAGNL AAAIKFSGQS SKVAQGRGSS GFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951931 | 0.0 | JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570524.1 | 0.0 | uncharacterized protein LOC100846611 isoform X2 | ||||
TrEMBL | W5CX78 | 0.0 | W5CX78_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_6F783E776.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 8e-88 | TRF-like 6 |
Publications ? help Back to Top | |||
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