PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF075600040CFD_t1 | ||||||||
Common Name | TRAES_3BF075600040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 18425.8 Da PI: 10.3625 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+ TRAES3BF075600040CFD_t1 31 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 81 7********.**********883....5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.78E-30 | 30 | 89 | No hit | No description |
SMART | SM00380 | 1.6E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-22 | 31 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.944 | 31 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 31 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 31 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDPVLRGAAS LGGGHGQGGT GGGGGGGGEA HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT 60 FDTPVEAALA YDRAARTLRG AKAKTNFPDH AHHHHHRPPM QQPVPFGGVD LNFPSPWHFV 120 YFSRPPAAPA PRLPQEASPA VSVPPSTALE LGVAPGPAGL PFDLNEPPSL LFGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 31 | 88 | 5 | 63 | ATERF1 |
3gcc_A | 3e-21 | 31 | 88 | 5 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172360.1 | 2e-88 | ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A077RV53 | 1e-120 | A0A077RV53_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q298 | 1e-120 | A0A446Q298_TRITD; Uncharacterized protein | ||||
STRING | MLOC_66843.1 | 8e-76 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-34 | ERF domain protein 12 |
Publications ? help Back to Top | |||
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