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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF075200070CFD_t1 | ||||||||
Common Name | TRAES_3BF075200070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 674aa MW: 73671.9 Da PI: 8.2919 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.7e-16 | 42 | 96 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ ++++++q+++Le +F + +p++++r +++++gLt +qVk+WFqN+R+ +k TRAES3BF075200070CFD_t1 42 RRLQRLNPQQTQVLEGFFGICAHPDENQRMGMSESTGLTMQQVKFWFQNKRTHMK 96 6667899*********************************************998 PP | |||||||
2 | START | 102.1 | 9.4e-33 | 195 | 409 | 1 | 203 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 ela++a+ e+v + +++ p+W+ ++ + +n++ + q+f + + + +ea ra g+v m++ + v ++d+ +++ ++ TRAES3BF075200070CFD_t1 195 ELAQSAMHEFVVLSESGGPLWMPVPggslDVLNKMAYAQTFGAGSSanaigFMTEATRADGMVMMDAKQIVDYIMDSE-CYTSFCP 279 57899************************************77666999*******************9999999999.******9 PP .......EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS START 78 .......kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152 ++++ +s+ ga +lm+ e++++splvp R+ +fvR++r ++ g+ +ivdvS+d+ + ++++ pSgi TRAES3BF075200070CFD_t1 280 glvtsanTTKVYKWPTSAgynGAMHLMTVETVFPSPLVPsRKCTFVRCCRDMQNGTVIIVDVSLDNGDGT------FKCHKMPSGI 359 9999555555555555658***********************************************9995......68******** PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 li+++ s+vt+vehv +++ +h+l+r+ + sgl++ga++wv+ rq TRAES3BF075200070CFD_t1 360 LIRSLNSDASQVTVVEHVQVNDTGVHELYRPSL-SGLMFGARRWVSSIVRQ 409 *******************************98.699********876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-17 | 25 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.21E-15 | 26 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.495 | 38 | 98 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-13 | 40 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.79E-14 | 41 | 97 | No hit | No description |
Pfam | PF00046 | 9.5E-14 | 42 | 96 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 73 | 96 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 21.124 | 186 | 415 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.15E-17 | 191 | 409 | No hit | No description |
CDD | cd08875 | 1.23E-74 | 193 | 411 | No hit | No description |
Pfam | PF01852 | 3.1E-25 | 195 | 406 | IPR002913 | START domain |
SMART | SM00234 | 1.0E-12 | 195 | 412 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.3E-4 | 252 | 379 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.73E-9 | 453 | 627 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MTGNRGGRRR KAGRRARDND LDISQSNSDG QDGAEGSQQP KRRLQRLNPQ QTQVLEGFFG 60 ICAHPDENQR MGMSESTGLT MQQVKFWFQN KRTHMKHVTG KEETYRMKAQ NEMLREENKR 120 LASAAKTAFC PACVALPGLN PSVEVQRLRQ ENESLKQQLS QLRAEAHPSS SRPFQLDPST 180 ENIIGRENDM DAIAELAQSA MHEFVVLSES GGPLWMPVPG GSLDVLNKMA YAQTFGAGSS 240 ANAIGFMTEA TRADGMVMMD AKQIVDYIMD SECYTSFCPG LVTSANTTKV YKWPTSAGYN 300 GAMHLMTVET VFPSPLVPSR KCTFVRCCRD MQNGTVIIVD VSLDNGDGTF KCHKMPSGIL 360 IRSLNSDASQ VTVVEHVQVN DTGVHELYRP SLSGLMFGAR RWVSSIVRQS ARMRDLFIVS 420 KSASNGNTNG RKTLMKIADG LLADYASGVA AVPGSGWTIL HGAGTEDDIR ITYRKNNDDS 480 NNAVVSVCAS FHLPVPLKVT FDLLKNNLLR PKWDVLVNGN SVREEVAVCK GVGAGIDDVV 540 SILHLKNRDN IMILQNSGYD VSGAFMVYCP VNIQVMNEIM SPSNTAESNN VSLYPTGFHL 600 LPVEDTALGL GEGGATLVTA GFQIMLKLAR GTGLYPRSAS TAAGLMTENI ATIKKTLTSS 660 HPIFYRRQPP NNLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF332036 | 0.0 | JF332036.1 Triticum turgidum subsp. durum HD-Zip IV transcription factor GL9H2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164122.1 | 0.0 | homeobox-leucine zipper protein TF1-like | ||||
Swissprot | Q5ZAY0 | 0.0 | TF1_ORYSJ; Homeobox-leucine zipper protein TF1 | ||||
TrEMBL | A0A077S0S2 | 0.0 | A0A077S0S2_WHEAT; Uncharacterized protein | ||||
STRING | TRIUR3_16941-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10475 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-110 | protodermal factor 2 |
Publications ? help Back to Top | |||
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