PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF066100070CFD_t1

Common Name

TRAES_3BF066100070CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 179aa MW: 18996 Da PI: 10.7508

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF066100070CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.8e-10	88	131	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L TRAES3BF066100070CFD_t1 88 KEQNRLKRLLRNRVSAQQARERKKAYMTELEVKAKDLELRNAEL 131 78899***********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-12	87	151	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-11	88	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.059	89	152	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-16	92	151	No hit	No description
SuperFamily	SSF57959	5.38E-12	92	149	No hit	No description
CDD	cd14704	1.13E-13	92	142	No hit	No description
PROSITE pattern	PS00036	0	94	109	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MAAQEQEQQA KTSTTSSLPS SSDRSSSSGP NNLKEGGAES DEEIRRVPEM GGGSASSGAG 60 DGKQLQLAAA GGGQAPAGKK RGRAAGDKEQ NRLKRLLRNR VSAQQARERK KAYMTELEVK 120 AKDLELRNAE LEQKVSTLQN ENNTLRQILK NTTAHAGKKP SGGKGGDSGK KHHHHFGKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	83	GKKRGRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365648	0.0	AK365648.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2035O05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188760.1	3e-71	transcription factor HY5-like
Swissprot	Q9SM50	7e-44	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A077RQT7	1e-123	A0A077RQT7_WHEAT; Uncharacterized protein
STRING	BRADI2G04590.1	6e-68	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	4e-29	bZIP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]