PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF066000010CFD_t1 | ||||||||
Common Name | TRAES_3BF066000010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 347aa MW: 36891.8 Da PI: 7.3969 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114 | 6.7e-36 | 105 | 161 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + l+cprCdstntkfCy+nnysl qPr+fC++CrryWt+GG+lrnvPvGgg r++ k TRAES3BF066000010CFD_t1 105 SGLNCPRCDSTNTKFCYFNNYSLIQPRHFCRSCRRYWTRGGTLRNVPVGGGYRRHAK 161 5689***********************************************999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-32 | 93 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.323 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-31 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 109 | 145 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MIFLPAFLDS SNFWNTDHNQ LQLQQIGTNT QSTTTPSPAG PGDGGCNNNN EEGFMATAGA 60 GSVAGGGGND GCSGAGDGDC SKSGNSKSMS MSERAQLAGL PQPVSGLNCP RCDSTNTKFC 120 YFNNYSLIQP RHFCRSCRRY WTRGGTLRNV PVGGGYRRHA KRRGKPNVVS NTSRSTAVGT 180 SSVTTTMSSN TTYATGTGPV PPGLQGPMLG SAPSHDSQFA HRIDPASLGL SFPDRLLFAD 240 GGSCAVDGCA QHHHNHAHWY GMEQWSAAQI GSFPFMHAMD HQMSGAMPIT MATMQGMFHL 300 GLQSVGGGKD DNRGGHLLHH KQQDYSSSRG MYGDMVNGEL DQDLFLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181317.1 | 1e-141 | dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A080YUV2 | 0.0 | A0A080YUV2_WHEAT; Uncharacterized protein | ||||
STRING | TRIUR3_30678-P1 | 1e-145 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 1e-37 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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