PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF062700040CFD_t1 | ||||||||
Common Name | TRAES_3BF062700040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | RAV | ||||||||
Protein Properties | Length: 320aa MW: 34816.4 Da PI: 5.6904 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.4e-11 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f ++ A +a++ a+++++g TRAES3BF062700040CFD_t1 47 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAVRAYDVAALRFRG 95 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 94 | 1e-29 | 171 | 263 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+ tpsdv+k++rlv+pk+ ae+h g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD TRAES3BF062700040CFD_t1 171 FEKAVTPSDVGKLNRLVVPKQQAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGD 256 89****************************99996666899********************************************* PP EEEEEE- CS B3 79 fvvFkld 85 +v F+++ TRAES3BF062700040CFD_t1 257 TVAFYRS 263 ****954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-14 | 47 | 102 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.34E-21 | 47 | 101 | No hit | No description |
Pfam | PF00847 | 1.2E-5 | 47 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-17 | 48 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-23 | 48 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.401 | 48 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-37 | 167 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-29 | 169 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.53E-27 | 170 | 263 | No hit | No description |
Pfam | PF02362 | 1.9E-26 | 171 | 263 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-21 | 171 | 270 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.831 | 171 | 281 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MASGKPTNHG MEDDNDMEYS SAESGAEDAA EPSSSPVLAP PRAAPSSRFK GVVPQPNGRW 60 GAQIYEKHSR VWLGTFPDED AAVRAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEL 120 DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV 180 GKLNRLVVPK QQAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT 240 KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISDENETGHV 300 AVKLFGVDIA GGGMAGSSGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-47 | 168 | 284 | 11 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191027.1 | 0.0 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
Swissprot | Q9AWS7 | 1e-122 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A077RPS8 | 0.0 | A0A077RPS8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_D9C941D4C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 6e-97 | ethylene response DNA binding factor 3 |
Publications ? help Back to Top | |||
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