PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF062700040CFD_t1
Common NameTRAES_3BF062700040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 320aa    MW: 34816.4 Da    PI: 5.6904
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF062700040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.4e-114795155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s++kGV   + +grW A+I++      + r++lg+f  ++ A +a++ a+++++g
  TRAES3BF062700040CFD_t1 47 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAVRAYDVAALRFRG 95
                             689***9788.8*********3.....5**********99*************98 PP
2B3941e-29171263185
                              EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                              f+k+ tpsdv+k++rlv+pk+ ae+h         g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD
  TRAES3BF062700040CFD_t1 171 FEKAVTPSDVGKLNRLVVPKQQAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGD 256
                              89****************************99996666899********************************************* PP

                              EEEEEE- CS
                       B3  79 fvvFkld 85 
                              +v F+++
  TRAES3BF062700040CFD_t1 257 TVAFYRS 263
                              ****954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1447102IPR016177DNA-binding domain
CDDcd000185.34E-2147101No hitNo description
PfamPF008471.2E-54795IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1748103IPR001471AP2/ERF domain
SMARTSM003802.7E-2348109IPR001471AP2/ERF domain
PROSITE profilePS5103219.40148103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-37167279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29169266IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-27170263No hitNo description
PfamPF023621.9E-26171263IPR003340B3 DNA binding domain
SMARTSM010193.0E-21171270IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831171281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MASGKPTNHG MEDDNDMEYS SAESGAEDAA EPSSSPVLAP PRAAPSSRFK GVVPQPNGRW  60
GAQIYEKHSR VWLGTFPDED AAVRAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEL  120
DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV  180
GKLNRLVVPK QQAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT  240
KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYKKM NKNDDAADAA ISDENETGHV  300
AVKLFGVDIA GGGMAGSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4716828411121DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191027.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-122Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A077RPS80.0A0A077RPS8_WHEAT; Uncharacterized protein
STRINGTraes_3B_D9C941D4C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.16e-97ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]