PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF060500360CFD_t1 | ||||||||
Common Name | TRAES_3BF060500360CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 521aa MW: 56314 Da PI: 5.1573 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.8 | 9.2e-11 | 175 | 261 | 5 | 97 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 r w+ eDe+ +L +l+ + +g++ +++ v +s++ k +k+++ eK+r+++++++k v++ g +k++d f TRAES3BF060500360CFD_t1 175 RRWTVEDELKILEALVRHVKANGTQ--PGAGELIAVVGGSLERKnCTKTEMYEKVRNIRQRYEKAVST---G--ALPEKDDDLRKF 253 78****************9999976..57899*********875389*******************99...3..44567889999* PP DUF573 90 elskkiWg 97 +ls+++Wg TRAES3BF060500360CFD_t1 254 KLSEQVWG 261 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-15 | 174 | 261 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MGRKRRQPSP PPPPPPEEDS SAEESSSAEE EEEEEEEAAE ATPATQNSPK PPSAAADDDA 60 EADADSSDGS DEESSESGKI DAEAFELRQI ASSNPPPAAA SKPESDDQEP TPPGKDKKKR 120 KAGAEKVAPE PSPSGKAKKK ALSELTPSSE GKKKHKAQPE KTAPWNKLEK PGQPRRWTVE 180 DELKILEALV RHVKANGTQP GAGELIAVVG GSLERKNCTK TEMYEKVRNI RQRYEKAVST 240 GALPEKDDDL RKFKLSEQVW GANAKQVAAA TMAQNEAASL KSKKKGQTSK EKTEGHSKGG 300 AAKEATASAD ETEGYSKGAT AKQATEEKVE EDGKGRSSKK ASTADTPAKS RKRGNHNEEL 360 EGDAKTATTK ETVDTTTQNG GTLVRSKSGK SDKEKADGDA ESPTPTEDMA DAQNGGTLAL 420 YKTEGEAHEE KMDTDANVKG TRKGFEELQK LYPNLTSYVE DIQAQHPCGE TLKRAFEFIP 480 DEKACTLESK IKKQRVAELR MEMRRSDTKK EVTNIFIGLL D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193496.1 | 0.0 | triadin-like | ||||
TrEMBL | A0A077RT14 | 0.0 | A0A077RT14_WHEAT; Uncharacterized protein | ||||
STRING | EMT26970 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7289 | 27 | 37 |
Publications ? help Back to Top | |||
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