PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF048700110CFD_t1
Common NameTRAES_3BF048700110CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 378aa    MW: 40327.2 Da    PI: 4.3838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF048700110CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05354377123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              + C+ C+++F + s L++H +  H
  TRAES3BF048700110CFD_t1 354 HACKSCSRTFGSASALQSHEKAkH 377
                              67*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.136354378IPR007087Zinc finger, C2H2
PROSITE patternPS000280356377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKFWGVEVKP GQTVYCDPGE GRVVHLTQVA LGETEKRSVG IPVSAKIGDQ KGVIGTLSAE  60
NHPQILCDLI FEKQFELSHS SKTASVFACG YKIPKHNCTS DSSESDSSES DSSEFDSSES  120
DSSEDEVETV NNQVANPIVG NVAKPPTTKD DKKVTDNHDS GEDDSDFYST DSDDYDDDGY  180
SSLDTDSEED GTSSEEMDTS SKEEDKDSPK PEDGKKAVAE TALKTPASDD TSSKEGSSDE  240
EDKNTPKPED GEKTVGAETA LKTPASDDTS NKEGTSDQED KNTPKPEVGT KRAAETALET  300
PAPDKKAKIE TPSGQDTDDK KIVHVATPHP AKQADKAPGN SKQHLKSKYV GGAHACKSCS  360
RTFGSASALQ SHEKAKHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163860.10.0histone deacetylase HDT3-like
TrEMBLA0A077S6340.0A0A077S634_WHEAT; Uncharacterized protein
STRINGTraes_3B_6B78FC95F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-28histone deacetylase 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]