PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF046300070CFD_t1 | ||||||||
Common Name | TRAES_3BF046300070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | VOZ | ||||||||
Protein Properties | Length: 550aa MW: 61659.5 Da PI: 5.1925 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 420.4 | 3e-129 | 255 | 472 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaat 85 p+p++fl+pkcalwdc+rpaqgse++qdycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vg+p+cegaat TRAES3BF046300070CFD_t1 255 PAPASFLRPKCALWDCPRPAQGSERWQDYCSMYHAELAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGVPVCEGAAT 340 89*************************************9879******************************************* PP VOZ 86 akspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlye 171 +kspwna+elfdl ++ege++rewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpsss+ewhlye TRAES3BF046300070CFD_t1 341 TKSPWNAPELFDLYIFEGESMREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSSYEWHLYE 426 ************************************************************************************** PP VOZ 172 yeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 yein+ da+alyrle+k++++kksak+k ++++l ++q++++rl+a TRAES3BF046300070CFD_t1 427 YEINDRDAFALYRLEFKSSEAKKSAKSKFTCSPLIEIQQQMVRLSA 472 ********************************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MRKGPSRSGS ARHQQFRARA KTRVDDLQDM FSGLQYARKE ARSTDAVLLE AQLHQMLREW 60 RAELSVPSPA SSLQENNNRD PSDPPSETPR PPQLAPAEEE DDATSKLVEQ KPRPSANQAH 120 KHAQGDHDMK PEPHEEAIAD PVTVAQQPTS LGPGVVATGG EVLTPATAVF HDQMYYVNQE 180 LSVEDFLYDD DYKINLPGSN PEILNNLEGI GHQEYLQFNL PQELPPNAYL DMNNYGQNAG 240 DGFLHMSDLL TTMSPAPASF LRPKCALWDC PRPAQGSERW QDYCSMYHAE LAVKEEGPPG 300 TMPVIRPRGI DLKDGPLFAA LSAKIQGKHV GVPVCEGAAT TKSPWNAPEL FDLYIFEGES 360 MREWLFFDKP RRAFDSGNRK QRSLPDYNGR GWHESRKQVM KDFGGLKRSY YMDPQPSSSY 420 EWHLYEYEIN DRDAFALYRL EFKSSEAKKS AKSKFTCSPL IEIQQQMVRL SADGPVENKR 480 TARARTQDVS TNVYPVQNNT AQANAPDAYQ AASQADQMTF LNGSVVYGPH LPYGYSTEGG 540 DFYWNSNDGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363185 | 0.0 | AK363185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013F10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201118.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-149 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A077RUV7 | 0.0 | A0A077RUV7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PZJ7 | 0.0 | A0A446PZJ7_TRITD; Uncharacterized protein | ||||
STRING | MLOC_75554.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-142 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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