PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF042000020CFD_t1
Common NameTRAES_3BF042000020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 615aa    MW: 66774.3 Da    PI: 9.1011
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF042000020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.23.3e-13159198242
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                              +kk CnC++skClk+YCeCfa+g +C+  C+C++C+N+ e+
  TRAES3BF042000020CFD_t1 159 KKKCCNCRHSKCLKLYCECFASGIYCDG-CNCTNCFNNVEN 198
                              799*************************.********9875 PP
2TCR50.93.2e-16243281139
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN 
  TRAES3BF042000020CFD_t1 243 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNF 281
                              589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-15158198IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.335159283IPR005172CRC domain
PfamPF036381.9E-9160195IPR005172CRC domain
SMARTSM011142.4E-19243284IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12246281IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAGKEQAGAG AGGAGSGPLP RVPVPAVSTQ PPIKKLVRQL DFNYGNPAMA AAAAAASRTV  60
QPRALQVGYP QPHQLRAVLP MGVPHQLQPR GLPVMRPHQM VHAPLPRPAL PMAMPVPVPQ  120
ARSALPQPVQ RPPVAVPLKP ESPKPRGRLY DGKDGTPTKK KCCNCRHSKC LKLYCECFAS  180
GIYCDGCNCT NCFNNVENEV ARREAIEATL ERNPDAFRPK IGSSPHTNRN NMEVAGDLPL  240
IGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN FDGSEDRKHL NFDHKNVIHM  300
QQAANAAVNG AIGATALSSP STSRKRKHID SSLDLSTKEH LAIRNGQLSQ VIYQKNAMAS  360
DGSFPIGQSA HPHMMGPFKV TYRPLLADII QPGDVKELCK LLVTVSGQAA KAYTGRKIQE  420
EKVAEKEDGV GGSLALTNHD REGKSKDQNH RKISIDDHSS GGTDMGKASL DDSRPDCTDD  480
QKSSRPMSPG TLALMCDEQD AMFATSQNAV APSAIDVDQN RSELYAEQER CVLTEFRGCL  540
RKLVQYGRMK EEKYSMAIRS EVTGHPGQVN GALRIPYPKV DVPVVKTFPQ SSSKHLVAGN  600
TSSGHLDKRL KPENT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2816329014130Protein lin-54 homolog
5fd3_B3e-2816329014130Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739830.0AK373983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168106.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A077RV970.0A0A077RV97_WHEAT; Uncharacterized protein
TrEMBLA0A446Q0430.0A0A446Q043_TRITD; Uncharacterized protein
STRINGTraes_3B_3DADBA71C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-122Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]