PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF029100010CFD_t1 | ||||||||
Common Name | TAA_ctg0005b.00100.1, TRAES_3BF029100010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 441aa MW: 49460.3 Da PI: 5.0231 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.5 | 1.1e-33 | 13 | 103 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+ye++++++++ ++ w+ +g+sfvvl + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF++++F TRAES3BF029100010CFD_t1 13 FLTKTYEMVDEPATDAVVAWTPSGTSFVVLSQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFI 89 9***************************************************************9998.........********* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkk 101 +++++ l++i+r+k TRAES3BF029100010CFD_t1 90 RDQRHRLKNIHRRK 103 ************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 6.94E-33 | 9 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.9E-59 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.2E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.5E-30 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEGSGGSASL PPFLTKTYEM VDEPATDAVV AWTPSGTSFV VLSQADFCRD LLPKYFKHNN 60 FSSFVRQLNT YGFRKVDPEQ WEFANEEFIR DQRHRLKNIH RRKPIFSHSS HTQGAGPLAD 120 SERRDYDEEI ERLKCDNASL KLQLERKKTD MESKMKALED KLFAIEDQQK NLISYVREIV 180 NAPGFFSSFV EQSDHQGKKR RLPKPISFHE DTSTQGNQIM HCDLVNSPTH ELFRASFDKM 240 ESSLNSLENF FKEASEAFGN DVSYDGDVPG HSSAVVLTEL HSSAESEPLH SSAESEPHEQ 300 SPPSMMHTCS AGVGDSHSSR DIAESASCPE SPPLPEAHSR ADSRAKVSEI DVNLEPAVTE 360 TGPSRDQQPT QDPPADANDG FWQQFLTEQP GLSHAHQEAQ SERRDREANQ TTAGDRGSFW 420 WGKSVEQMTE KLGHLTSAEK T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-28 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-28 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-28 | 3 | 102 | 19 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564426 | 0.0 | FN564426.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0005b. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165982.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | D8L9G2 | 0.0 | D8L9G2_WHEAT; Heat shock factor, putative, expressed | ||||
STRING | Traes_3B_95339D42A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 4e-79 | HSF family protein |