PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF026100020CFD_t1 | ||||||||
Common Name | TRAES_3BF026100020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 232aa MW: 25496.3 Da PI: 8.5189 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.4 | 3.1e-27 | 41 | 92 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eCl+NhAa+ Ggh++DGC+Efmp+ + + l CaACgCHR+FHRr+++ TRAES3BF026100020CFD_t1 41 RRQYHECLRNHAAAAGGHVLDGCCEFMPA----SPEDPLACAACGCHRSFHRRDPS 92 568*************************9....4458****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-19 | 24 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.6E-23 | 43 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.7E-23 | 43 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.782 | 44 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 141 | 213 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.1E-17 | 143 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-23 | 154 | 211 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEFRGEEDGD GSDVGDGAPP AAPHRSATAN GPADNMQAEA RRQYHECLRN HAAAAGGHVL 60 DGCCEFMPAS PEDPLACAAC GCHRSFHRRD PSPGRAHLPL LAASARAPLL LPPAASKHPH 120 QRLPFPYGLA ASGGTGTTTE SSSEERRGPS PAPRKRSRTT FTREQKEQML EFAERVGWRL 180 QRQDEAMVGH FCAQAGVRRQ ALKVWMHNNK QSSSGRRQQQ EKQLQEHRQE QQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-23 | 155 | 215 | 18 | 80 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172063.1 | 1e-148 | zinc-finger homeodomain protein 5-like | ||||
Swissprot | A2WSZ6 | 1e-67 | ZHD5_ORYSI; Zinc-finger homeodomain protein 5 | ||||
Swissprot | Q5VM82 | 1e-67 | ZHD5_ORYSJ; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A077RTB8 | 1e-169 | A0A077RTB8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PTW4 | 1e-169 | A0A446PTW4_TRITD; Uncharacterized protein | ||||
STRING | BRADI2G44540.1 | 6e-75 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 1e-34 | homeobox protein 26 |
Publications ? help Back to Top | |||
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