PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF025700050CFD_t1

Common Name

TRAES_3BF025700050CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 237aa MW: 26607.2 Da PI: 6.3676

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF025700050CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.2	2.3e-32	24	115	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F+ k+y++++d++++ ++ w + +nsfvv d+ f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h F TRAES3BF025700050CFD_t1 24 FVAKTYTMVDDPATNAVVAWGAASNSFVVADPFAFSEMLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHACFL 100 9**************************************************************999.........***** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+++ll +i r++s TRAES3BF025700050CFD_t1 101 RGQTHLLPRIVRRRS 115 *********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.4E-48	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.08E-32	21	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	8.5E-36	22	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-28	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-17	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-17	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-17	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSSSAGMECS GRGDGGGGMV APPFVAKTYT MVDDPATNAV VAWGAASNSF VVADPFAFSE 60 MLLPAHFKHS NFSSFVRQLN TYGFRKVDPD RWEFAHACFL RGQTHLLPRI VRRRSMRPSK 120 DDNEEDEDSS STMLAMEVVR LKEDQRATED RLAAMWRRVQ DAERRPKLML AFLLKVVRDH 180 DVLRRLAAGS GAGQDEGAEE AKRPRLLLNG EAQMQDAFVG EPGVDFTGFF FFFFFFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-25	21	113	17	120	Heat shock factor protein 1
5d5u_B	2e-25	21	113	26	129	Heat shock factor protein 1
5d5v_B	2e-25	21	113	26	129	Heat shock factor protein 1
5d5v_D	2e-25	21	113	26	129	Heat shock factor protein 1
5hdg_A	1e-25	21	113	7	110	Heat shock factor protein 1
5hdn_A	1e-25	21	113	7	110	Heat shock factor protein 1
5hdn_B	1e-25	21	113	7	110	Heat shock factor protein 1
5hdn_C	1e-25	21	113	7	110	Heat shock factor protein 1
5hdn_D	1e-25	21	113	7	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196612.1	1e-105	heat stress transcription factor C-2a-like
Swissprot	Q6EUG4	1e-77	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A080YTS6	1e-173	A0A080YTS6_WHEAT; Uncharacterized protein
STRING	Traes_3B_6396F53A9.1	1e-135	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-59	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]