PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF025700040CFD_t1 | ||||||||
Common Name | TRAES_3BF025700040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 229aa MW: 25563 Da PI: 4.852 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 76.2 | 5.6e-24 | 1 | 83 | 9 | 100 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 +++d++++ ++ w + +nsf+v+d+ f++ +Lp++Fkhsnf+SFv Q n+YgF+kv+ ++ weF++ F +g+ +ll TRAES3BF025700040CFD_t1 1 MVDDPAMDAMVAWGSASNSFAVTDPFAFSEMLLPTHFKHSNFSSFVPQVNTYGFRKVNPDR---------WEFADAFFLRGQMHLL 77 899*******************************************************999.........**************** PP XXXXXX CS HSF_DNA-bind 95 ekikrk 100 +i r+ TRAES3BF025700040CFD_t1 78 PRIVRR 83 ***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.1E-27 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.0E-26 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.7E-21 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.71E-24 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-7 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-7 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVDDPAMDAM VAWGSASNSF AVTDPFAFSE MLLPTHFKHS NFSSFVPQVN TYGFRKVNPD 60 RWEFADAFFL RGQMHLLPRI VRRWNGGKRG KEDAGEGDED ISSKMLAMEV VRLKEEQRAT 120 KDRLAAMWRP VQDAECRPKL MLAFLLKVVG DPDVLRRLVG NLSSNDGLFP GEGAETKRPR 180 LLLNGEAQMQ DAFVGEPGVD FTGFYTGGDG FSEVPVDNPP YAFPMDTGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-17 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-17 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-17 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5hdg_A | 2e-17 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-17 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-17 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-17 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-17 | 1 | 83 | 17 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196612.1 | 1e-119 | heat stress transcription factor C-2a-like | ||||
Swissprot | Q6EUG4 | 1e-77 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | A0A080YTS5 | 1e-167 | A0A080YTS5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_754688BC3.2 | 1e-145 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 4e-51 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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