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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF024700170CFD_t1 | ||||||||
Common Name | TRAES_3BF024700170CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21850 Da PI: 4.3303 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.4 | 7.2e-08 | 11 | 53 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 sg+ GVr+++ +g W +e +se g +r+++ ++ +a eAa a++ a TRAES3BF024700170CFD_t1 11 SGFFGVRQKP-SGNWGVE---FSEAG--RRWWIDTYPSAHEAACAYDVA 53 6777****99.7******...98865..******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-14 | 11 | 68 | No hit | No description |
SuperFamily | SSF54171 | 5.49E-10 | 11 | 67 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-6 | 12 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.895 | 12 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-14 | 13 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAPKKTPKGK SGFFGVRQKP SGNWGVEFSE AGRRWWIDTY PSAHEAACAY DVAVWRAERP 60 RSHLNFPEIE SRAIAEMLVP QGINMKEITT KKPSVVVSAG ETNEEAMARF AREHPEYVQA 120 ELEHYWKRKA EQKKKEDEAG PSTVIPIESS SEEDCADYLE EEEEEEEEEE GCDDPTKEEF 180 WEQFRSSDEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191686.1 | 1e-111 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A077RV89 | 1e-135 | A0A077RV89_WHEAT; Uncharacterized protein | ||||
STRING | EMT28879 | 1e-68 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16811 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 2e-10 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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