PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF022100010CFD_t1
Common NameTRAES_3BF022100010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 515aa    MW: 53643.2 Da    PI: 7.7959
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF022100010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.41.5e-1568128257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              ++R+++ +eq+++Le+lF++   +p+++e+ ++ ++l     + +++V++WFqNr+ + k+
  TRAES3BF022100010CFD_t1  68 KPRWNPRPEQIRILETLFNSgLINPTRDEIPRIRMRLqeygPVGDSNVFYWFQNRKSRSKN 128
                              89*****************99****************99999****************995 PP
2Wus_type_Homeobox103.71.2e-3367129264
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                              +++RW+P+peQi+iLe+l++sGl +P+++ei ri+++L+eyG ++d NVfyWFQNrk+R+++k
  TRAES3BF022100010CFD_t1  67 TKPRWNPRPEQIRILETLFNSGLINPTRDEIPRIRMRLQEYGPVGDSNVFYWFQNRKSRSKNK 129
                              689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-656128IPR009057Homeodomain-like
PROSITE profilePS5007110.46364129IPR001356Homeobox domain
SuperFamilySSF466891.53E-1064132IPR009057Homeodomain-like
SMARTSM003891.7E-566133IPR001356Homeobox domain
CDDcd000861.14E-568129No hitNo description
PfamPF000464.9E-1368127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MASPNSRQQQ QHWPSMFRSK HGSQVWQSQP DMTSSPPSLV SGSTAAAGHS FKSPFSSGPD  60
QERNTDTKPR WNPRPEQIRI LETLFNSGLI NPTRDEIPRI RMRLQEYGPV GDSNVFYWFQ  120
NRKSRSKNKL RNAAARVAPV RACAPARQQA AAPYTPPPKQ FHPPKPPLFS PVAPTSSSSS  180
SSDRSSGSSK PVKPAATQAM SATAAMDLLS PLAAACHQQM HYQFGLSQHA VSASAPAPAP  240
APTLDEFVAT DVEPIFLQYP QGHCLSAGEL ATILGAQYMP VPAVQQPPVA SPAGMLLGLC  300
NDVALGPTST GHRSSASAAG LGQYWSSGVD QLGLRKNSDP FLNTSVAKEE AYEDFTKTKL  360
GLVQYGLGVT AAPATSAAAV LPPAASPDSA AVTVASASAT AELTSLFATT ATTDAISYNS  420
NLQGPADDVG FAGAAAAAGA GATGVLGRGA AVVCFAGTSA ACSVPATHLD VKLYFGDGAV  480
LFRCNGDRAE PLVVDDAGLT VEPLQHGGVY YCVLI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159266.10.0WUSCHEL-related homeobox 7-like
SwissprotQ0JKK61e-115WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A077RSZ60.0A0A077RSZ6_WHEAT; Uncharacterized protein
TrEMBLA0A446PV880.0A0A446PV88_TRITD; Uncharacterized protein
STRINGEMT084841e-166(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-41homeobox-3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]