PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF021000010CFD_t1 | ||||||||
Common Name | HsfC1e, TRAES_3BF021000010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 325aa MW: 35716.5 Da PI: 6.3128 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101.4 | 8.4e-32 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F+ k+y+++ d++++ l++w + +nsf+v+d f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h+sF TRAES3BF021000010CFD_t1 25 FVAKTYQMVCDPRTDALVRWGKGNNSFLVTDVAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFL 101 9****************************************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+++ll +i r+k+ TRAES3BF021000010CFD_t1 102 RGQTHLLPRIVRRKK 116 ************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.3E-49 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.7E-34 | 21 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.66E-32 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.2E-16 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-27 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-16 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-16 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDGLHTELAL GLIGCGHGDL QTAPFVAKTY QMVCDPRTDA LVRWGKGNNS FLVTDVAGFS 60 QLLLPCFFKH GNFSSFVRQL NTYGFRKVHP DRWEFAHESF LRGQTHLLPR IVRRKKRGEA 120 GVGASCSSAV GGGEQQQHVV ANMGDQGEEE EDEEGREALL DEVQRLRQEQ TAIGEQLAQM 180 SRRLQATERR PDRLMSFLSR LAEDPNATSL HLLEQAAEKK RQRMQCPSRD FTSFPIALPL 240 QPAPSPPPPP LLALGDAAMG GVRVWQWAEP MPLKLTTVEQ PSGSSGVQQV PEFEGGRSGS 300 GMGITDGGTA VETPFPFCLL GQCFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-21 | 25 | 114 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 25 | 114 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 25 | 114 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208553 | 0.0 | KF208553.1 Triticum aestivum heat shock factor C1e (HsfC1e) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162679.1 | 0.0 | heat stress transcription factor C-1a-like | ||||
Swissprot | Q6VBA4 | 1e-124 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | A0A024DBP4 | 0.0 | A0A024DBP4_WHEAT; Heat shock factor C1e | ||||
TrEMBL | A0A446PTW1 | 0.0 | A0A446PTW1_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_A475F002B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 7e-55 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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