PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF014900010CFD_t1 | ||||||||
Common Name | TRAES_3BF014900010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 450aa MW: 47036.2 Da PI: 6.8852 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.1 | 1.6e-34 | 83 | 179 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssase 72 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l + ++++s+ TRAES3BF014900010CFD_t1 83 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDNLDTLpawqptavapaasnaAAPPSSS 168 79**************************************************************6666555544443332222222 PP TCP 73 ceaesssssas 83 ++++s +s++ TRAES3BF014900010CFD_t1 169 TQPDSADNSDD 179 22222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-31 | 83 | 169 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.669 | 85 | 143 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MGDAGQSHHH HGLQTQLLSF GGAGSHHHHM HQFTAQAQPP AASQTRARGG RGGEMVPATP 60 ARVRGGGGGE IVAVQGGHIV RSTGRKDRHS KVCTARGPRD RRVRLSAHTA IQFYDVQDRL 120 GYDRPSKAVD WLIKNAKDAI DNLDTLPAWQ PTAVAPAASN AAAPPSSSTQ PDSADNSDDQ 180 AQAITIAHSS FDFAGSGGAG GATGGISFLP PSLDSDSIAD TIKSFFPMGG TTGGEPSSST 240 VAAHSSAMGF QGYTPDLLSR TGSQSQELRL SLQPLPDPMF HHHQQQEQHR SDGHDGNGTA 300 QQTLFPGAAS YSFGGGGAMW GEQAASQRMM PWNVPDPGGG STGGYLFNVS QQAAHMQAAL 360 SGQSQFFFQR GPLQSSNQPS DRGWPETVEA DDNNPMQQHQ GGLNPSVSAI GFGPGVSFSG 420 FRVPARMQGN EEHNGGNGDK PPSVSSASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 90 | 143 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 90 | 143 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175459.1 | 0.0 | transcription factor PCF5-like | ||||
Refseq | XP_020175460.1 | 0.0 | transcription factor PCF5-like | ||||
Swissprot | Q8LT07 | 1e-178 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | A0A077RQV4 | 0.0 | A0A077RQV4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_BE78EBA50.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-38 | TCP family protein |
Publications ? help Back to Top | |||
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