PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF005100030CFD_t1 | ||||||||
Common Name | TRAES_3BF005100030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 37705.8 Da PI: 7.1233 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 27 | 9e-09 | 127 | 147 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK + + fpr TRAES3BF005100030CFD_t1 127 SDGYQWRKYGQKRIMRTSFPR 147 7*******************9 PP | |||||||
2 | WRKY | 56.3 | 6.4e-18 | 156 | 222 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE......-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver......saedpkvveitYegeHnhe 59 +Dgy+WrKYGqK + + fpr YYrC ++ +Cp++k v++ s+ d+++ ++tY eH+++ TRAES3BF005100030CFD_t1 156 SDGYQWRKYGQKRIMRTSFPRCYYRCCYHrerSCPATKLVQQqppqqhSDGDQTMYTVTYVHEHTCH 222 7**************************998999*******86333222567899**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-7 | 116 | 147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-7 | 120 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.777 | 121 | 147 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-6 | 128 | 148 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-19 | 149 | 223 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-18 | 149 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.032 | 150 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-25 | 155 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-20 | 157 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MQTQSRLIMN PNGGVTGYEP AATDEQHEAV LRELAHGHEL TAHLQAEALR ALHGQGQTEA 60 TAALILQEVS RAFTVCINIM GGSAPAATPT TPPPDAAGVV VTGAASARRP RDDGVPRKVT 120 VTSSPYSDGY QWRKYGQKRI MRTSFPRVTV TSSPYSDGYQ WRKYGQKRIM RTSFPRCYYR 180 CCYHRERSCP ATKLVQQQPP QQHSDGDQTM YTVTYVHEHT CHNMAPAEPE AAARSSTPDP 240 LGFSAGMQPR QQQRGGAGLD RGSKEELERQ ALVSSLACVL QGHHQSYTGS GAGTPDGSPS 300 QGRVGDGPSA SGLSLDTSDD LGLDVMDYGV TDALYFAASS SYGPGGDGMI P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186012.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A077S4W2 | 0.0 | A0A077S4W2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_0C5417706.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12538 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 2e-10 | WRKY DNA-binding protein 54 |
Publications ? help Back to Top | |||
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