PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF005100020CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 147aa MW: 15760.7 Da PI: 9.1153 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 27.6 | 6e-09 | 127 | 147 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK + + fpr TRAES3BF005100020CFD_t1 127 SDGYQWRKYGQKRIMRTSFPR 147 7******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-8 | 115 | 147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-7 | 120 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.465 | 121 | 147 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-6 | 128 | 147 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MQTQSRLIMN PNGGVTGYEP AATDEQHEAV LRELAHGHEL TAHLQAEALR ALHGQGQTEA 60 TAALILQEVS RAFTVCINIM GGSAPAATPT TPPPDAAAVV VTGAASARRP RDDGVPRKVT 120 VTSSPYSDGY QWRKYGQKRI MRTSFPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186012.1 | 7e-81 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A3B6FVZ0 | 1e-101 | A0A3B6FVZ0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q391 | 1e-103 | A0A446Q391_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_0C5417706.2 | 1e-102 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12538 | 28 | 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|