PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF004600020CFD_t1

Common Name

TRAES_3BF004600020CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 183aa MW: 19207.3 Da PI: 6.6739

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF004600020CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171	1.4e-53	40	135	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqdr+lPianv+rimk+vlP nak+sk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl TRAES3BF004600020CFD_t1 40 KEQDRLLPIANVGRIMKQVLPPNAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFSALGFDDYVDPMRRYL 125 89********************************************************************************** PP NF-YB 88 kkyrelegek 97 k+releg++ TRAES3BF004600020CFD_t1 126 LKFRELEGDR 135 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-49	36	140	IPR009072	Histone-fold
SuperFamily	SSF47113	1.26E-37	42	139	IPR009072	Histone-fold
Pfam	PF00808	1.2E-26	45	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.5E-17	73	91	No hit	No description
PROSITE pattern	PS00685	0	76	92	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.5E-17	92	110	No hit	No description
PRINTS	PR00615	4.5E-17	111	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MADHHYTHLG GGSGSGGGGG GGSPPERLHG GGGSGDQGIK EQDRLLPIAN VGRIMKQVLP 60 PNAKVSKEAK ETMQECVSEF ISFVTGEASD KCHKEKRKTV NGDDVCWAFS ALGFDDYVDP 120 MRRYLLKFRE LEGDRAAAAA SSRGGLPVPD ASTSGAGASG SGNFMFEAMD RRDNTGPGTG 180 RQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-43	39	130	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-43	39	130	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	22	SGSGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196188.1	1e-105	nuclear transcription factor Y subunit B-1-like
Swissprot	O82248	4e-55	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A077RSD1	1e-131	A0A077RSD1_WHEAT; Uncharacterized protein
TrEMBL	A0A446QCI8	1e-131	A0A446QCI8_TRITD; Uncharacterized protein
STRING	MLOC_7755.1	1e-100	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-56	nuclear factor Y, subunit B5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]