PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0002000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 368aa    MW: 41760.5 Da    PI: 5.2498
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0002000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132.1e-35461362101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws +++sfvv+d++ f++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  Spipo9G0002000  46 FLTKTYDMVEDPDTDRVVSWSPTSSSFVVWDPHAFSRTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANQGFLRGERHLLKT 131
                     9********************999*****************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r++
  Spipo9G0002000 132 IQRRR 136
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.5E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3942135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3246135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNFPYPVKEE YPGAGPSGSG DPPLWGPPRQ PPRPIEGLHD LGPPPFLTKT YDMVEDPDTD  60
RVVSWSPTSS SFVVWDPHAF SRTLLPKYFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANQG  120
FLRGERHLLK TIQRRRPPAH PPHHRRPVGP CLEVGRFGLD GEIDRLKRDK NILMSELVKL  180
RQEHQNTRAC IHAMEERIQG TEQKQQQMMT FLARAMQNPA FIHQLVQEKE RRKEIEEAIG  240
KKRRRSIDQG PDGGDLPSPG NPPPYVESTI KLEACRYDCD GPESSAEAEY HLAHEMNAGN  300
HDEGDEEQEG RREEGGGERE LNDDFWEELL SEGIVDESGG PVAGEIDAEE VDVLAEKLRW  360
LSSTSAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-264413527129Heat shock factor protein 1
5d5v_B2e-264413527129Heat shock factor protein 1
5d5v_D2e-264413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230244RRKEIEEAIGKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813499.11e-145heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-131HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2H3ZH901e-143A0A2H3ZH90_PHODC; heat stress transcription factor A-2b-like
STRINGXP_008813499.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-92heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]