PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0067500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 554aa    MW: 59294.4 Da    PI: 5.9948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0067500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30304362259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Spipo8G0067500 304 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGTHNHP 362
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33288364IPR003657WRKY domain
SuperFamilySSF1182904.84E-28296364IPR003657WRKY domain
PROSITE profilePS5081129.677298364IPR003657WRKY domain
SMARTSM007744.8E-37303363IPR003657WRKY domain
PfamPF031063.6E-27305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
RPALKNEPRA GSLPPAPSGD DDERKRVDEM DFFSGEKKRK AEFSPVRTEN LELKAPFTGA  60
EKDDLSAEAL FPWQTRLHLL TANTGSDQST LDDGMSANED EKEDKSEVKL ATMQAALARM  120
KEENLRLRVT LNNVTASYNS LQMHLIQLMK QRSQVNGNAD NHEKIDNIRK SHSSVPSMVP  180
WQFMDLGLAS GADEASNSST EEGSPERCGS PPNNAEVVSM DYSLQMAGGK AGDGDGAAFD  240
HDKPGDGDDG REDSAGREES HGWASNKLTK INPAARDTSE PPQEAMMRKA RVSVRARSEA  300
PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRSI LITTYEGTHN  360
HPLPPAAMAM ASTTSAAASM LLSGSMPSAD GLVSSNGVMS SNFLARTLLP CSSSMATISA  420
SAPFPTVTLD LTHPPAPLQF QRPQQQQQPP PQPAVMAAPS AGMPQIFGQA LYSQSKFSGL  480
QTSKDAAEPP HFAHPMAAPL QQLPADTLSA ATAAITSDPN FKAVLAAAIS SMIASAGNQG  540
NNANTLNILN ALNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22290366176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12339RKRVDEMDFFSGEKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926194.11e-177probable WRKY transcription factor 31 isoform X1
TrEMBLA0A1D1XGY40.0A0A1D1XGY4_9ARAE; Putative WRKY transcription factor 42 (Fragment)
STRINGXP_008779787.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-106WRKY family protein