PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0061900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 301aa MW: 32611.8 Da PI: 7.9794

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0061900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.9	8.9e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p+ q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P++Ga+g+++++++ql+q+ Spipo8G0061900 4 SCNGCRVLRKGCSDNCSIRPCLqwiknPEWQGNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIHGAIGLLWTGSWQLCQA 98 6**********************99999*************************************************************** PP DUF260 91 kaelallke 99 +++++l ++ Spipo8G0061900 99 AVDAVLKGR 107 *99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.813	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKN PEWQGNATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRMVNP IHGAIGLLWT GSWQLCQAAV DAVLKGRPIA QIPVDSSAGA 120 PIPPLQKAFS SSIRHVSKED AAVKEINKVN KDSRTPFKRS VKRRLLSPKD FYILTRPQSS 180 TSGGSDRNST DDDDCRENEA MLSVETVEGS LVTCHETERG KVGREAAEDS DVELELTLGF 240 EPAHHSHSSS SSSSHSRGHS GTWSGIRPAG EELPKGHGPI RMDGVDRDGL GKDLGLDLPA 300 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	164	KRSVKRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394433.1	7e-93	PREDICTED: LOB domain-containing protein 40
Swissprot	Q9M886	2e-73	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A200Q3F6	2e-91	A0A200Q3F6_9MAGN; Uncharacterized protein
STRING	XP_008799243.1	9e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-76	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Spipo8G0061900