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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo8G0023100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 146aa MW: 17145 Da PI: 10.0472 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.2 | 1.9e-12 | 32 | 67 | 4 | 41 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 e++ +r t+ kRr gi+KKAeEL + Cd+ v++ fs Spipo8G0023100 32 EDDARRGATLKKRRSGIIKKAEELRIFCDTYVLI--FS 67 8999**************************8864..55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.175 | 21 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-11 | 21 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-16 | 23 | 108 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.37E-17 | 23 | 101 | No hit | No description |
PRINTS | PR00404 | 5.1E-7 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.2E-11 | 32 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-7 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MTQILKLKDL ARDRRSGRIF IPRKKIKIQW LEDDARRGAT LKKRRSGIIK KAEELRIFCD 60 TYVLIFSPNE DQPEVFPIVE QAVEMCRRFK QLPEFSRANL MLTNMQYIQV EYQIGDMGRK 120 CFARGDGMIQ GMIEERQTGW NDLQT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 44 | RKKIKIQWLEDDARRGATLKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 4e-13 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | Spipo8G0023100 |