PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0010600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 417aa    MW: 43295.6 Da    PI: 9.9137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0010600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019171193223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ Cg+ F r++ ++ H  + H
  Spipo8G0010600 171 SCHRCGEKFGRWDAMEAHHLSkH 193
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-21195413No hitNo description
Gene3DG3DSA:3.90.228.106.3E-9233390IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPTVWFALKR SLHCKSEPSE VYDPKRKAAG AGGAAGILTR KMGRSGCSRS IANLKDVVIH  60
GSKRHLERPP SCSPRSIGSS EFANPIAHEV ILSSSTCELR ITGFGGGAAT ASSTAPSHNY  120
FPSLRTGPCA TNPPRKTTTA ALSDAVFGGA AARNPQKAAA GGSLGCSAMV SCHRCGEKFG  180
RWDAMEAHHL SKHAVTELAE GDSSRKIVEI ICRTSWAKAA AAAEGGSGGG AGGMIERVLK  240
VHNMQKTLAR FEEHREMVKQ RAAKLPKKHP RCLADGNELL RFHGTTVACS LGAGGGAGVC  300
SAESCSVCRI IRQGFSARGG TIGVFTTSTS GRALEAIAAA GDGGDGGGGG RKALVLCRVI  360
AGRVHRPVED LREPPPLMGF DSLAGKVGLH ANIEELYLLN PRALLPCFVV ICRPSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241023.10.0PREDICTED: uncharacterized protein LOC104585747
TrEMBLA0A1U7YTI31e-180A0A1U7YTI3_NELNU; uncharacterized protein LOC104585747
STRINGXP_010241023.11e-180(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-142C2H2 family protein