PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0010500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GeBP
Protein Properties Length: 342aa    MW: 37304.4 Da    PI: 4.8189
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0010500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.53.3e-27156252296
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.spsddidafyef.vkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      fqr+w +eDei+lL+G+ +f+a+ g  +p + +daf +  +++s+ +k+s+sql++K+rrL++K++ +  + k+g  psfs++hd  +felsk 
  Spipo8G0010500 156 PFQRVWKQEDEIALLRGMAEFQAEYGGaDPCSAVDAFQNLlLRRSVRLKFSRSQLTDKMRRLRRKYEANLLRGKKGAGPSFSRAHDIAAFELSKA 250
                     59*******************99987659********9963699*************************************************** PP

          DUF573  95 iW 96 
                     iW
  Spipo8G0010500 251 IW 252
                     ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.7E-24157252IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MPPRRAAMPP PSPGSSGASS TSSDEEEQQQ AQAGFLSPLG KKPLHPAASP PLPLSSLRSG  60
SDEEDDEDDD GDGDEKSGEY EPAHRPQKAV RPPPSESESE SQSESESESD ATAPPPAGGR  120
KRKQPEVKAE VEEEEEEEEE EEEEGGAASD RWGKRPFQRV WKQEDEIALL RGMAEFQAEY  180
GGADPCSAVD AFQNLLLRRS VRLKFSRSQL TDKMRRLRRK YEANLLRGKK GAGPSFSRAH  240
DIAAFELSKA IWPRKEGANQ AAEPGHPMLR QAVALLAKEW GEASPAGERL WSALQCLKPA  300
AARALEERWG RHFLAGVKLL LERCDLTKQL LGAVVEALGQ A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-20DNA-binding storekeeper protein-related transcriptional regulator