PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0058500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 576aa    MW: 63575.9 Da    PI: 4.3626
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0058500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.92.5e-24200253155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt+eLH  F++av++L G+++A Pk+il+lm+  +Lt+++v+SHLQkYR 
  Spipo7G0058500 200 KERMEWTNELHLLFLHAVDKL-GINRAAPKKILKLMGRRDLTRTNVASHLQKYRQ 253
                     68*******************.********************************6 PP
2Response_reg54.85.2e-19151201106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +++vdD++  ++ + q le+ gy  v+ ++  ++al++l +    + lil+  +m +md++ ll++ + +  ++p+i+++a g +e+a+e+lkaG
  Spipo7G0058500  15 IMVVDDNEQSLHDIVQGLESYGY-TVTPCSRVTSALDILSKDAgrFALILTEARMVDMDAFSLLQQVEVSF-DIPVIMMSAGGGMELAVECLKAG 107
                     89*********************.***************877777**********************9988.9********************** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a+ +l Kp d ++
  Spipo7G0058500 108 ASFYLQKPLDYAA 120
                     ********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-2412129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-2613154No hitNo description
SMARTSM004481.2E-1513124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.38714129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-1415120IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.12E-1816117No hitNo description
PROSITE profilePS5129412.106197256IPR017930Myb domain
SuperFamilySSF466894.03E-18198257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-24198257IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-23200253IPR006447Myb domain, plants
PfamPF002491.5E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MAASILSLFP GGLGIMVVDD NEQSLHDIVQ GLESYGYTVT PCSRVTSALD ILSKDAGRFA  60
LILTEARMVD MDAFSLLQQV EVSFDIPVIM MSAGGGMELA VECLKAGASF YLQKPLDYAA  120
VSTIWQHVAL KKIRTVPIQD TRRMENRGSS PSFSEAGEER RGAGESPDNT NRRDVEDDEE  180
NEGDEEAEGG VNGSAETEKK ERMEWTNELH LLFLHAVDKL GINRAAPKKI LKLMGRRDLT  240
RTNVASHLQK YRQYLAKITE NSNRPESNRR RRRFSLTKKR SVFECGPEHL TEIHRLEMEN  300
LNQSFATDDQ RFADIPIKPQ VASMKHTDIP MALPFPASAA QGNATQQTRL YPQQAPRNCS  360
YFPDSTAENS QTFGLEYTVG LGACVAADAS SLKLHRSNII GGSDVIEPQN EGCGDNYIGL  420
ELQTACEQLG LALGTSPGPK VIEPVEGESE DEIIEDMILD QLLQKEAVSS EKRKNMHWDL  480
SLSGLGKNDP TIPTSGNHFS PLNQSSEELL ENEELSIDGF LDTELDSLSQ DIEHISQEDI  540
MSLLFDDQFL KLQDEDANIA EQADISSSSQ EDGTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17198259364ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-40response regulator 1