PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo7G0049300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 133aa MW: 14804 Da PI: 10.0171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1e-09 | 51 | 98 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR +i +++ +L++l+P + +k + Ka +L + ++Y+++L+ Spipo7G0049300 51 SHSIAERARRGKISERMRTLQSLVPGC----DKVVGKALMLDEIINYVQYLR 98 8*************************9....555****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-16 | 45 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.99E-7 | 45 | 102 | No hit | No description |
PROSITE profile | PS50888 | 15.027 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-16 | 48 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-7 | 51 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-8 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
SSSNLQDADE AKRRKRRKSG PPTKEAAAAA ACGPPAGYIH VRARRGEATD SHSIAERARR 60 GKISERMRTL QSLVPGCDKV VGKALMLDEI INYVQYLRNQ VEFLSFKLAA INHLFFSSYM 120 DLDHLIKSEL VCS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 17 | KRRKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159982.1 | 1e-47 | hypothetical protein PHAVU_002G283100g | ||||
Swissprot | Q93W88 | 7e-45 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | V7CSS3 | 3e-46 | V7CSS3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159982.1 | 5e-47 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo7G0049300 |
Publications ? help Back to Top | |||
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