PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Spipo7G0043600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 191aa MW: 20406.1 Da PI: 11.2291

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo7G0043600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.9e-06	155	177	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg++F + +L+ H+ H Spipo7G0043600 155 PCPDCGEMFMKPASLELHQAErH 177 6******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.806	154	182	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	156	177	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MAERKSSRKA HRREDHRKKP EKPPPPPPPS WGAVWGILTC KRRHADVGRA RSRRIGCSGS 60 LRKLKDASRV MHRPVTPSPE ARKKCSTGAG GAVSSSHSSL SSSSLTTGSS SSSSSAGGSF 120 RVLHLRRLSG CYECHTVVDP VNGTGRDSSL RTISPCPDCG EMFMKPASLE LHQAERHAGG 180 SSSAILPPWF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927412.1	7e-39	uncharacterized protein LOC105049460
Refseq	XP_029121699.1	7e-39	uncharacterized protein LOC105049460
TrEMBL	A0A1D1YET8	1e-45	A0A1D1YET8_9ARAE; Uncharacterized protein ZK353.4
STRING	GSMUA_Achr5P01120_001	2e-31	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-13	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Spipo7G0043600