PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0070100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 17760.2 Da PI: 8.3121 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.4e-05 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg Fs L H+r+H Spipo6G0070100 81 HECPICGLEFSMGQALGGHMRRH 103 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.17E-8 | 38 | 103 | No hit | No description |
Pfam | PF13912 | 6.4E-11 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.6E-12 | 80 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.058 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.556 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKRARSEEEG EEEGTAVANV LMLLSTGEEA HRPRHNGRLF GCKTCNRQFA SFQALGGHRA 60 SHKKPRLPGE RLAQAGKPRV HECPICGLEF SMGQALGGHM RRHRAAAESF AQRYVEKRPG 120 GDKCADSPCL DLDLNTFPSE KEVDLHPLNL TLGLTMVGCF H* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922390.1 | 7e-46 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A426ZJ92 | 4e-43 | A0A426ZJ92_ENSVE; Uncharacterized protein | ||||
STRING | XP_008788081.1 | 1e-43 | (Phoenix dactylifera) | ||||
STRING | XP_008795640.1 | 1e-43 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 9e-32 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0070100 |