PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0041700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 572aa    MW: 63625.8 Da    PI: 5.7692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0041700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15378423454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h  +ErrRR+++N++f  Lr+l+P+      +K++Ka+iL  +++YIk+L
  Spipo6G0041700 378 KHVLAERRRREKLNQKFLALRSLVPSV-----TKVDKASILGDTIDYIKQL 423
                     6899**********************8.....8*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-3870231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-15378428No hitNo description
SuperFamilySSF474593.01E-18378442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-18378441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGDTSLGKKG SDPQGVREGE ESGLGEGETR IVSLGLGRER RERRAASYPS ISLYLDLSLL  60
PLRDFSSWRY HEQRVLSWAD GCYNGVIKTR KTVQQTEEAG GSPVEDNEHL HRSQQLRELY  120
QSLLAEEDNL EPTRRPWAAL SPEDLTESEW FFLMCISFSY PPGIGLPGKA FKTQRPVWLS  180
GANDVDSKVF SRAILAKTVV CIPLFGGVLE IGTTDRVEED PNLIHQVKNV FRACRSDHAL  240
SEVSICIPAP GEQPISGHNA EDDGDVDDGA ESTYDSRALE ESRVEDLEMP GEPKVTVTAV  300
EKGAPPEGCS DYGGLLEHRR RSAFSTWSPR EVPILMQQGG SAQEILKLML RTIPHLYSGW  360
ADERSLKSTE GEDLLSGKHV LAERRRREKL NQKFLALRSL VPSVTKVDKA SILGDTIDYI  420
KQLLRRTEEY EDRIRQMESE KTTIAPKVFA FDGGERMTNP RRRSQASDVM TRAGSKRQRA  480
SCNDGELVNG GSLHVSVIET DVLVEMKCRN VDGLLVRIME ALDELRLDTT SITSASTDGT  540
FKVEIRAKVK QVNGKRASIV QVKKALYQLL P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-186323234193Transcription factor MYC3
4rqw_B4e-186323234193Transcription factor MYC3
4rs9_A4e-186323234193Transcription factor MYC3
4yz6_A4e-186323234193Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382387ERRRRE
2383388RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A199V6V71e-118A0A199V6V7_ANACO; Basic helix-loop-helix protein A
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-100bHLH family protein