PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0041600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 505aa    MW: 56481.2 Da    PI: 5.5862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0041600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15316361454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h  +ErrRR+++N++f  Lr+l+P+      +K++Ka+iL  +++YIk+L
  Spipo6G0041600 316 KHVLAERRRREKLNQRFLALRSLVPSV-----TKVDKASILGDTIDYIKQL 361
                     6899**********************8.....8*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-2427155IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.765312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18316378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-13316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-15316366No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18316379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MKGNDRERRA GDRWRGGGNQ DFSSWRHHEQ SVLSWADGCY NGVIKTRKTV QQTEEAGGSP  60
VGDNEHLHRS QQLRELYQSL LAEEDNLEPP RRPWAALSPE DLTESEWFFL MCISFSYPPG  120
IGLPGKAFKT QRPVWLSGAN VVDSKVFSRA IIAKVEEDPD LTQQVKNVFR ACRSDFALSE  180
VSTCNPAPGQ QPISGHHAED DGDVDDGAES TYDSRALDES RIEDFELPGE PELNVTSVEK  240
GGPPEDCPDY SGLLDNHRRS AFSAWSPREV PILMQQGGSA QEILKLVLRN IPHLYSGLED  300
ERSPKSTEGE DLLSGKHVLA ERRRREKLNQ RFLALRSLVP SVTKVDKASI LGDTIDYIKQ  360
LLRRTEEYEA RIRQMESEKT TIAFDGGEQM TNPRRRSQAS DVMTRAGSKR QRASCNDGEL  420
VNGGSLHVSV IDTDVLVEMK YRNVDGLLVR IMEALDELRL DTTSITSAST DGTFKVEIRA  480
KVKQVNGKRA SIFQVKKALY QLLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-15317382967Transcription factor MYC2
5gnj_B9e-15317382967Transcription factor MYC2
5gnj_E9e-15317382967Transcription factor MYC2
5gnj_F9e-15317382967Transcription factor MYC2
5gnj_G9e-15317382967Transcription factor MYC2
5gnj_I9e-15317382967Transcription factor MYC2
5gnj_M9e-15317382967Transcription factor MYC2
5gnj_N9e-15317382967Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320325ERRRRE
2321326RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-83bHLH family protein