PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0041200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 546aa    MW: 60293 Da    PI: 6.275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0041200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16352398455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P+      +K++Ka+iL  +++YIk+Lq
  Spipo6G0041200 352 KHVLAERRRREKLNQRFLALRSLVPSV-----TKVDKASILGDTIDYIKQLQ 398
                     6899**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-4622205IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.765348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-17352402No hitNo description
SuperFamilySSF474591.44E-18352412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-14352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-19352415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-18354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVDPQGSAGV ANGSSNGSPT SLHQRLQAVV LSIQWTYSLF WKFSPCRGVL SWVDGYYNGV  60
IKTRKTVQQT EEAGASPVED NEHLHRAQQL RELYQSLLAE EDNLEPPRRP WAALSPEDLT  120
ESEWFFLMCI SFSYPPGIGL PGKAFKTQRP VWLSGANSVD SKVFSRAILA KTVVCIPFSA  180
GVLEIGTTDW VEEEPGLIHQ VKNVFRACRS DLAPSEVSTC NPGPGQQPIS GRHAEDDGDV  240
DDGAESTYDS RALEESPVDD LEPPEGPKLN VTSAEKGAPP EDCSDYGGLL RDHRRSAFST  300
WIPRQGPILM QEGKSAQKIL KLVLRTIPHL YSGWADETSP KSTEGEDLLS GKHVLAERRR  360
REKLNQRFLA LRSLVPSVTK VDKASILGDT IDYIKQLQRR TEEYEARIRK VESEKTTIAS  420
KVFASDGGER MTNPRRRSLA SDVMTRAGSK RQRSSCNDGE SVDGGSLHVS VIDTDMLVEI  480
KCQNVDGLLV RIMETLDDLR LDTTSITSAS TDGTFKVEIR AKVKQINGKR VSIVQVKKAL  540
YQLLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-25212068193Transcription factor MYC3
4rqw_B6e-25212068193Transcription factor MYC3
4rs9_A6e-25212068193Transcription factor MYC3
4yz6_A6e-25212068193Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERRRRE
2357362RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-103bHLH family protein