PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0006100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 471aa    MW: 50809.9 Da    PI: 6.3244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0006100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4032.9e-123534651374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..........sseelaalkl 83 
                     l++lLl+cA+ v++gdle a+a+L+++  l aspdgd+mqR+aa ft ALa+rl+r s++++++a++++++                 +l a++ 
  Spipo6G0006100  53 LIHLLLNCANYVAAGDLEHANACLEHIALLgASPDGDTMQRIAALFTDALARRLLRsSWPGIFRAITTTSSGGGGggattaapspAPAALLARRH 147
                     689*****************************************************9********998877644444444556666677777799 PP

            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     f++++P+lk+s+++aNqaIlea+ege+ vH iD+ +  +  W+aLlqaL+ Rpeg+p+lRiTgv++    ++e le +++rL++ Ae+l+vpf+f
  Spipo6G0006100 148 FFDLCPFLKLSYVIANQAILEAMEGEHVVHLIDLHAADPSPWIALLQALSRRPEGAPHLRITGVHD----QREVLELVASRLSDEAEKLDVPFQF 238
                     ******************************************************************....9************************ PP

            GRAS 179 nvlvakrledlele.eLrvkpgEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkvvvvveqea 246
                     n+ v+++ledl+ e +Lrvk+gEa+aV+++lqlhrll                          + + s + + d++L ++++l Pk++vv+eqe+
  Spipo6G0006100 239 NA-VVSKLEDLDAErSLRVKTGEAVAVCSILQLHRLLapdsyrkpsspsrcsvlrsgdsgvssAPPPSCSTRMDAFLAALWGLAPKIMVVAEQES 332
                     **.7999***987638********************************************9987777778899********************** PP

            GRAS 247 dhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                     dhn++s++erf+eal+yy+alfd+le+ ++++   eer+ vE  l+g+e +++va+egaerrerhe+l +W +r+e+aGF  vpls++a  qa++
  Spipo6G0006100 333 DHNGGSLVERFTEALNYYAALFDCLESAAAAAGrgEERARVESTLFGEEMRDIVAAEGAERRERHERLDRWLRRMESAGFLRVPLSYYALLQARR 427
                     *************************7765555458************************************************************ PP

            GRAS 340 llrkvk..sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                     ll++ +    gy v ee  g+  l+W+dr+L+svSaWr
  Spipo6G0006100 428 LLQQGYggCGGYGVREEaGGCHALCWQDRALFSVSAWR 465
                     **997766667***988255566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.66827442IPR005202Transcription factor GRAS
PfamPF035141.0E-12053465IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVGMAVLDEG SSVASSPLQF LSLMSISRTA LAAGGGSPVV AQEMKSDERG IFLIHLLLNC  60
ANYVAAGDLE HANACLEHIA LLGASPDGDT MQRIAALFTD ALARRLLRSS WPGIFRAITT  120
TSSGGGGGGA TTAAPSPAPA ALLARRHFFD LCPFLKLSYV IANQAILEAM EGEHVVHLID  180
LHAADPSPWI ALLQALSRRP EGAPHLRITG VHDQREVLEL VASRLSDEAE KLDVPFQFNA  240
VVSKLEDLDA ERSLRVKTGE AVAVCSILQL HRLLAPDSYR KPSSPSRCSV LRSGDSGVSS  300
APPPSCSTRM DAFLAALWGL APKIMVVAEQ ESDHNGGSLV ERFTEALNYY AALFDCLESA  360
AAAAGRGEER ARVESTLFGE EMRDIVAAEG AERRERHERL DRWLRRMESA GFLRVPLSYY  420
ALLQARRLLQ QGYGGCGGYG VREEAGGCHA LCWQDRALFS VSAWRCRRFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-55424678381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026426647.11e-179scarecrow-like protein 3
RefseqXP_026426648.11e-179scarecrow-like protein 3
SwissprotQ9LPR81e-168SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1D1YEG60.0A0A1D1YEG6_9ARAE; Scarecrow-like protein 3
STRINGXP_010273289.11e-178(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-136scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]