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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Spipo5G0048600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family |
Trihelix |
Protein Properties |
Length: 553aa MW: 61399.3 Da PI: 5.2653 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Spipo5G0048600 | genome | MIPS/IBIS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 109.5 | 2.2e-34 | 367 | 451 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k ev+aLi++r+++e+r+++ lk+plWeevs++m++ g++rs+k+Ckekwen+nk+++k+k++ kkr s++s+tcpyf+ql+
Spipo5G0048600 367 RWPKAEVQALIQVRSNLETRFQEPGLKGPLWEEVSSAMAAMGYQRSAKRCKEKWENINKYFRKTKDSIKKR-SNHSKTCPYFHQLD 451
8*********************************************************************8.89999********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 553 aa
Download sequence Send
to blast |
MTQQLFHHGH QFHLFQQEQQ RRIHQQLVQL GLDHDSGPEN STSPTRIIAA ASGGGSAGIS 60 PFLNGVDFKL GVNDSIGGGD SRERLNDEEG ILQVDDGEEI HHIHPWATRE DSNIKEPFWR 120 PLDIDYSNRN SKRCKEKQPD ASNSASNFKL FSELEAICKP ISSSGDCGGG GNRPSVNNNQ 180 QTGSGSVLTG ENPPAISTTP RADYGHNTET ADQGSDSSTG EEAAQIQKPT KCDGGRKRKR 240 RQHQLSSIAA FMEGLVKKLM EHQEGLHRKF LEILDRRDQE RMNREETWRQ QEAAKATSEA 300 MAKAQDQALA TSREAAIIFF LEKITGESLN LPTREQFHSP AQEESSHKEE PKHIDGTNPA 360 IVINPSRWPK AEVQALIQVR SNLETRFQEP GLKGPLWEEV SSAMAAMGYQ RSAKRCKEKW 420 ENINKYFRKT KDSIKKRSNH SKTCPYFHQL DQLYSKSPAK PPPPVAASAD RGDMSELLHA 480 VMAANDETHE AAGSAITGKG ALKLPWRKPN NLEENDEDED DDDDDDDDDE GEDEGEEADR 540 DSQGEGSRAP RS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 234 | 241 | GRKRKRRQ |
2 | 235 | 240 | RKRKRR |