PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0031500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 21376.4 Da PI: 9.7541 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa a++ a l+g Spipo5G0031500 45 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAAHAYDIAVYHLRG 94 69*****99.**********9...336**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-31 | 44 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 45 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 45 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-37 | 45 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-9 | 45 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-24 | 45 | 103 | No hit | No description |
PRINTS | PR00367 | 6.9E-12 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-12 | 84 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEGDCCSTSE DSGGRSSPSE GKAGGGGEGM GGAAAAAAGG GGGRQYRGVR MRKWGKWVAE 60 IREPNKRSRI WLGSYSTAVA AAHAYDIAVY HLRGRSARLN FPNELPAEGE DGDGTGGQRH 120 GGGGGESEAL SAALIRKKAT EVGARVDAMH AGTLGRRHHH VYNRPRRNQP QAEAAEKDRE 180 RRPMNPDLNR RPSPESSDNE F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 43 | 102 | 3 | 63 | ATERF1 |
3gcc_A | 1e-15 | 43 | 102 | 3 | 63 | ATERF1 |
5wx9_A | 2e-15 | 45 | 105 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 4e-38 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AK107775 | 4e-38 | AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence. | |||
GenBank | AP002536 | 4e-38 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 4e-38 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 4e-38 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | KP229661 | 4e-38 | KP229661.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF38) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387797.1 | 2e-63 | PREDICTED: ethylene-responsive transcription factor RAP2-9-like | ||||
Swissprot | Q9FH94 | 2e-40 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | M0UCQ2 | 6e-62 | M0UCQ2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP26940_001 | 9e-63 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-32 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0031500 |
Publications ? help Back to Top | |||
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