PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0018600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WRKY | ||||||||
Protein Properties | Length: 655aa MW: 69237.3 Da PI: 5.4248 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.6 | 9.6e-32 | 286 | 343 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers ++ ++eitY+g+Hnh+k Spipo5G0018600 286 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-EGVTTEITYKGTHNHPK 343 7****************************************.9**************85 PP | |||||||
2 | WRKY | 103.4 | 1.3e-32 | 486 | 544 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+ Spipo5G0018600 486 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 544 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.674 | 280 | 344 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-28 | 282 | 344 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-25 | 282 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-35 | 285 | 343 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 286 | 342 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-37 | 471 | 546 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-28 | 478 | 546 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.124 | 481 | 546 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-38 | 486 | 545 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-25 | 487 | 544 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MAGIEEKLPL AGDWAPMSTS TQEISSSFVG EGAPPEEKVP TVLPEAGEED GGRGRGAPCE 60 PFSEVKPPTG PRFGARAGLA ERMAVRAGFN APKLNTDRIR SGDVGPFSSE VQSPYLTIPP 120 GLSPTSFLDS PVFVSNSLAQ PSPTTGKFAL EQLGNTSGGS VSAATDKSRY NSAADVASES 180 FVFKPRGELS SYISNAKNNI ASAMDHQQLP LSSKLPVPPG SPNLESPDAA GIAHPQDPLR 240 FRSEQKDSAG DLSDSLMGDE PVDFQQDVEA ENRGESPLVP TSAQSEDGYN WRKYGQKQVK 300 GSEYPRSYYK CTHPNCQVKK KVERSLEGVT TEITYKGTHN HPKPAAQSRR SGAGPSLHPF 360 GEAAADGPEA RGPGSVLEGE LSLAKNVDCQ NANLNPRTYN FAAELGNAEP GQGPEGLLFE 420 PAGGSDLPSN LSNEEEDDDR VGGVEEDELE SKRRKLDVSS MEVGASSRAV REPRVVVQTT 480 SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCTVR KHVERASHDL KSVITTYEGK 540 HNHDVPAARS SSHAGTGPSG GGGTAPPPVH RRSLPGLVTH DGLPSFDGPP LPPLGSFAPA 600 GFPIVGQPTL WALQHGNGWP GTYRQHEDAA AATGGPFGSG AALLDGGWPR NTQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-37 | 286 | 547 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-37 | 286 | 547 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928175.1 | 1e-168 | probable WRKY transcription factor 2 | ||||
Refseq | XP_010928176.1 | 1e-168 | probable WRKY transcription factor 2 | ||||
Refseq | XP_010928177.1 | 1e-168 | probable WRKY transcription factor 2 | ||||
Refseq | XP_010928179.1 | 1e-168 | probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1D1XC23 | 0.0 | A0A1D1XC23_9ARAE; Putative WRKY transcription factor 2 | ||||
STRING | XP_008796561.1 | 1e-161 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 2e-93 | WRKY DNA-binding protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0018600 |