PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0009900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22520.1 Da PI: 5.0994 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.7 | 9.4e-16 | 41 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++k+g+W+A+I + g +k+ +lg + t eeAa a++ a+ + +g Spipo5G0009900 41 SKYRGVARHHKNGKWEARIGRvF---G-NKYLYLGIYATQEEAAMAYDMAAIEHRG 92 89****99**********99966...3.6**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-11 | 41 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.80E-23 | 41 | 102 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-17 | 41 | 102 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-22 | 42 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.201 | 42 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 42 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
LRVNEQLSTY QGEMEEMEGL SREEYISFIR RKSSGFSRGV SKYRGVARHH KNGKWEARIG 60 RVFGNKYLYL GIYATQEEAA MAYDMAAIEH RGLAAVTNFD ISRYLRSLGQ SSNPNPNHPP 120 PPPMEIAGEP TCDGANPPPP FDMLKNARER SPATPPPEPQ LSCFSDDVHT YLDGCGGGGA 180 AAADGYDVIF GDLDSLEPTF FHCE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605062.1 | 6e-63 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 9e-51 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A3Q8D687 | 3e-64 | A0A3Q8D687_9APIA; AP2/ERF transcription factor | ||||
STRING | VIT_11s0037g00870.t01 | 3e-62 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 7e-43 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0009900 |
Publications ? help Back to Top | |||
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